Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I08
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 293 5e-80
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 292 7e-80
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 292 7e-80
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 285 1e-77
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 284 2e-77
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 284 2e-77
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 284 2e-77
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 282 1e-76
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 281 2e-76
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 276 7e-75
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 241 2e-64
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 239 5e-64
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 169 6e-43
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 88 3e-18
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 86 1e-17
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 83 7e-17
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 75 3e-14
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 70 7e-13
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 58 4e-09
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 53 1e-07
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 29 1.6
At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containi... 28 2.8
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 27 6.5
At5g43500.2 68418.m05318 expressed protein 27 8.7
At5g43500.1 68418.m05319 expressed protein 27 8.7
At1g69670.1 68414.m08018 cullin, putative contains similarity to... 27 8.7
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo... 27 8.7
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 293 bits (718), Expect = 5e-80
Identities = 135/157 (85%), Positives = 145/157 (92%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT+AEREIVRD+KEKL Y+
Sbjct: 162 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAEREIVRDVKEKLAYI 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALD+EQEM TA S+S+EKSYELPDGQVITIG ERFRCPE LFQPS +GME+ GIHET Y
Sbjct: 222 ALDYEQEMETANTSSSVEKSYELPDGQVITIGGERFRCPEVLFQPSLVGMEAAGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+PGIADRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKE 318
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 292 bits (717), Expect = 7e-80
Identities = 134/157 (85%), Positives = 146/157 (92%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRDIKEKLCY+
Sbjct: 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYI 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALD+EQE+ TA S+S+EK+YELPDGQVITIG+ERFRCPE L+QPS +GME+ GIHET Y
Sbjct: 222 ALDYEQELETAKTSSSVEKNYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+PGIADRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKE 318
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 292 bits (717), Expect = 7e-80
Identities = 134/157 (85%), Positives = 146/157 (92%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRDIKEKLCY+
Sbjct: 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYI 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALD+EQE+ TA S+S+EK+YELPDGQVITIG+ERFRCPE L+QPS +GME+ GIHET Y
Sbjct: 222 ALDYEQELETAKTSSSVEKNYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+PGIADRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKE 318
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 285 bits (698), Expect = 1e-77
Identities = 133/157 (84%), Positives = 144/157 (91%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTTTAEREIVRDIKEKL YV
Sbjct: 162 SHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYV 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALD+EQE+ TA +S+S+EK+YELPDGQVITIG ERFRCPE LFQPS +GME+ GIHET Y
Sbjct: 222 ALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGG+TM+PGIADRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE 318
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 284 bits (696), Expect = 2e-77
Identities = 131/157 (83%), Positives = 144/157 (91%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEG++LPHAILRLDLAGRDLTDYLMKILTERGY FTTTAEREIVRDIKEKL +V
Sbjct: 162 SHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFV 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
A+D+EQEM T+ S+S+EK+YELPDGQVITIG ERFRCPE LFQPSF+GME+ GIHET Y
Sbjct: 222 AVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+ GIADRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKE 318
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 284 bits (696), Expect = 2e-77
Identities = 131/157 (83%), Positives = 144/157 (91%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEG++LPHAILRLDLAGRDLTDYLMKILTERGY FTTTAEREIVRDIKEKL +V
Sbjct: 162 SHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFV 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
A+D+EQEM T+ S+S+EK+YELPDGQVITIG ERFRCPE LFQPSF+GME+ GIHET Y
Sbjct: 222 AVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+ GIADRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKE 318
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 284 bits (696), Expect = 2e-77
Identities = 131/157 (83%), Positives = 144/157 (91%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEG++LPHAILRLDLAGRDLTDYLMKILTERGY FTTTAEREIVRDIKEKL +V
Sbjct: 162 SHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFV 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
A+D+EQEM T+ S+S+EK+YELPDGQVITIG ERFRCPE LFQPSF+GME+ GIHET Y
Sbjct: 222 AVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+ GIADRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKE 318
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 282 bits (691), Expect = 1e-76
Identities = 131/157 (83%), Positives = 143/157 (91%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRD+KEKL Y+
Sbjct: 162 SHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYI 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALDFEQE+ T+ S+S+EKS+ELPDGQVITIG ERFRCPE LFQPS +GME+ GIHET Y
Sbjct: 222 ALDFEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+ GI DRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKE 318
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 281 bits (688), Expect = 2e-76
Identities = 130/157 (82%), Positives = 143/157 (91%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEGYALPHAILRLDLAGRDLTD+LMKILTERGYSFTTTAEREIVRD+KEKL Y+
Sbjct: 162 SHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYI 221
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALD+EQE+ T+ S+S+EKS+ELPDGQVITIG ERFRCPE LFQPS +GME+ GIHET Y
Sbjct: 222 ALDYEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTY 281
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+ GI DRM KE
Sbjct: 282 NSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKE 318
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 276 bits (676), Expect = 7e-75
Identities = 124/157 (78%), Positives = 142/157 (90%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SHTVPIYEGYALPHAILRLDLAGRDLT+YL KI+ ERGY++TT+AEREIVRDIKEKLCY+
Sbjct: 163 SHTVPIYEGYALPHAILRLDLAGRDLTEYLTKIMMERGYTYTTSAEREIVRDIKEKLCYI 222
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
A+D+EQEM A S++++++YELPDGQVITIG ERFRCPE LFQ S +GME+ GIHET Y
Sbjct: 223 AVDYEQEMEKATTSSAIDRTYELPDGQVITIGAERFRCPEVLFQTSLIGMETSGIHETTY 282
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCDVDIRKDLY N V+SGGTTM+PGIADRM KE
Sbjct: 283 NSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMNKE 319
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 241 bits (589), Expect = 2e-64
Identities = 110/159 (69%), Positives = 129/159 (81%)
Frame = +1
Query: 4 RGSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 183
R SHTVP+YEGYALPH ILRLDL GRDLTDYL++I+TERGY++TT+AEREIVRDIKEKLC
Sbjct: 149 RVSHTVPVYEGYALPHGILRLDLGGRDLTDYLIEIMTERGYTYTTSAEREIVRDIKEKLC 208
Query: 184 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 363
YVALD+EQEM +++K+Y LPDGQ ITI ERF CPE LFQPS +G ES GIHE
Sbjct: 209 YVALDYEQEMEKTTKGWTIDKTYVLPDGQEITIEAERFMCPEVLFQPSVIGKESSGIHEA 268
Query: 364 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSI+KC VD R+D+Y N +M+GGTTM GI +RM KE
Sbjct: 269 TRNSILKCPVDTRRDMYGNILMTGGTTMLHGIKERMTKE 307
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 239 bits (586), Expect = 5e-64
Identities = 113/157 (71%), Positives = 132/157 (84%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
S+ VPIYEG ALPHAILRLDLAGR LT+YLMKI+ ERGY T+AERE+VRDIKE+ Y+
Sbjct: 117 SYIVPIYEGSALPHAILRLDLAGRHLTNYLMKIMMERGY---TSAEREVVRDIKEQFGYI 173
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALD+EQEM A S++++++YELPDGQVITIG ERFRCPE LFQPS +GME+ GIHE Y
Sbjct: 174 ALDYEQEMEKATKSSAIDRTYELPDGQVITIGAERFRCPEVLFQPSLIGMETSGIHEKTY 233
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
NSIMKCD DIRKDLY N V+SGGTTM+ GI +RM KE
Sbjct: 234 NSIMKCDDDIRKDLYGNIVLSGGTTMFRGIEERMTKE 270
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 169 bits (412), Expect = 6e-43
Identities = 73/157 (46%), Positives = 110/157 (70%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+H VP+ +GY+ PH R+++AGR +T YL+ +L+ RGY+ TA+ E VR+IKEKLCY+
Sbjct: 161 THVVPVVDGYSFPHLTKRMNVAGRHITAYLVDLLSRRGYAMNKTADFETVREIKEKLCYI 220
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
+ D+++E +T L K+Y LPDG+VI +G ERF+ PEALF P + +E G+ + V+
Sbjct: 221 SYDYKRESQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVF 280
Query: 370 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
I + D+D R LY + V+SGG+TMYPG+ R++KE
Sbjct: 281 RCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKE 317
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 87.8 bits (208), Expect = 3e-18
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 43/201 (21%)
Frame = +1
Query: 7 GSHTV-PIYEGYALPHAILRLDLAGRDLTDYLMKILTERG------YSF----------- 132
GS T+ P+++GY L A++ L G LTD L+K L +G YSF
Sbjct: 182 GSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQ 241
Query: 133 --------TTTA-----EREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 273
TT + +R IV DIK+ +C V + + + T+ SYELPDGQ
Sbjct: 242 VEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT---SYELPDGQT 298
Query: 274 ITIGNERFRCPEALFQPSFL----GMESC--------GIHETVYNSIMKCDVDIRKDLYA 417
+ IG +RF+ P+ +F PS + GME G+ V SI KCDVDIR++LY+
Sbjct: 299 LEIGADRFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKCDVDIRRELYS 358
Query: 418 NTVMSGGTTMYPGIADRMQKE 480
+ +++GGT+ + +R++K+
Sbjct: 359 SILLAGGTSSMQQLKERLEKD 379
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 85.8 bits (203), Expect = 1e-17
Identities = 56/153 (36%), Positives = 74/153 (48%)
Frame = +1
Query: 22 PIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 201
P+ EG A R +L G +LT + L + S + V +KE+ A
Sbjct: 152 PVLEGAVQHIASKRFELGGTELTKLFAQELGKTNPSMNLSMSD--VEKLKEQYANCA--- 206
Query: 202 EQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIM 381
E E+A + + LPDGQVI+IG ER+ EALFQPS LG+E GI E + I
Sbjct: 207 EDEIAYKKTQNCEIEQHTLPDGQVISIGRERYSVGEALFQPSILGLEEHGIVEQLVRIIS 266
Query: 382 KCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
+ + L NTV+ GGTT G R QKE
Sbjct: 267 TVSSENHRQLLENTVLCGGTTSMTGFESRFQKE 299
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 83.4 bits (197), Expect = 7e-17
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+H VP+ EGY + I + +AG+D+T ++ +++ ERG + ++ R +KE CY
Sbjct: 184 THVVPVAEGYVIGSCIKSIPIAGKDVTLFIQQLMRERGENIPPEDSFDVARKVKEMYCYT 243
Query: 190 ALD----FEQEMATAAASTSLEKSYELPDGQVIT--IGNERFRCPEALFQPSFLGME-SC 348
D F + A K + G T +G ERF PE F P + +
Sbjct: 244 CSDIVKEFNKHDKEPAKYIKQWKGVKPKTGAPYTCDVGYERFLGPEVFFNPEIYSNDFTT 303
Query: 349 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
+ + I +D R+ LY N V+SGG+TM+ R+Q++
Sbjct: 304 TLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRD 347
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 74.5 bits (175), Expect = 3e-14
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Frame = +1
Query: 85 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPD 264
LT +L + + E SF + VR +KEKLCYVALD++ E+ S + S E+
Sbjct: 288 LTGFLKEKMQENNISFQSLYT---VRTLKEKLCYVALDYKAEL-----SKDTQASVEVSG 339
Query: 265 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCD-VDIRKD--LYANTVMSG 435
T+ ERF+ E LFQP GM + +H+ V + CD + D + V++G
Sbjct: 340 EGWFTLSKERFQTGEILFQPRLAGMRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTG 399
Query: 436 GTTMYPGIADRMQKE 480
G+ PG+++R+++E
Sbjct: 400 GSACLPGLSERLERE 414
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 70.1 bits (164), Expect = 7e-13
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+H VP+ + L HAI R+DL G+ T+YL ++++ R S E +V D KEKLC+V
Sbjct: 164 THAVPVLHNFTLNHAIKRIDLGGKAFTNYLKELVSYR--SINVMDETFLVDDAKEKLCFV 221
Query: 190 ALDFEQEMATAAASTSLEKS-YELPDGQVITIG 285
+LD +++ A +L KS Y LPDG T G
Sbjct: 222 SLDLLRDLRLARNGNTLIKSTYVLPDGVTHTKG 254
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/114 (28%), Positives = 61/114 (53%)
Frame = +1
Query: 139 TAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALF 318
T + V+D + +++L E+E K ++ + I + NERF PE LF
Sbjct: 250 THTKGYVKDPQAAKRFLSLS-EKESVVVMDKVGERKKADMNKNE-IDLTNERFLVPETLF 307
Query: 319 QPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 480
QP+ LGM G+ E + +I C ++ LY + +++GG+T++P + +R++ E
Sbjct: 308 QPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGE 361
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 57.6 bits (133), Expect = 4e-09
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Frame = +1
Query: 145 EREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELP---DGQVITIGNERFRCPEAL 315
E E+ R + +L + F Q++ + TS E P + I IG ERFRCPE L
Sbjct: 544 EAELAR-LSSRLQEIDPTFVQKVEGELSQTSGEVPRVRPLTEEDYKIVIGIERFRCPEIL 602
Query: 316 FQPSFLGMESCGIHETVYNSIMKC---DVDIRKDLYANTVMSGGTTMYPGIADRMQ 474
F P+ +G++ G+ E SI + + ++ + L ++ +M+GG ++ PG+ +R++
Sbjct: 603 FHPNLIGIDQVGLDEMAGTSIRRLPHDEKELEERLTSSILMTGGCSLLPGMNERLE 658
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+H++P +G + R ++ G +TDYL ++L+ + ++ E D+K + CY+
Sbjct: 181 THSIPFVDGEPIYKGSSRTNIGGYHVTDYLKQLLSLKYPFHSSRFTWEKAEDLKLEHCYI 240
Query: 190 ALDFEQEM 213
A D+ E+
Sbjct: 241 APDYASEI 248
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 52.8 bits (121), Expect = 1e-07
Identities = 35/95 (36%), Positives = 50/95 (52%)
Frame = +1
Query: 85 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPD 264
LT +L + + E SF + VR +KEKLCYVALD++ E+ S + S E+
Sbjct: 288 LTGFLKEKMQENNISFQSLYT---VRTLKEKLCYVALDYKAEL-----SKDTQASVEVSG 339
Query: 265 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
T+ ERF+ E LFQP G+ +H+ VY
Sbjct: 340 EGWFTLSKERFQTGEILFQPRLAGII---VHKLVY 371
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 148 REIVRDIKEKLCYVALDFEQEMATAAASTSLE 243
R +++D KE+ C+ + ++ +A A AST++E
Sbjct: 826 RNLIQDAKERGCFHSAGEDESLAQAIASTNIE 857
>At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 398
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 393 NVALHDRVVDGLVDAARFHTQERGLEE 313
N+A++DR V LV A R H E LEE
Sbjct: 73 NIAVYDRTVRRLVAAKRLHYVEEILEE 99
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 82 DLTDYL-MKILTERGYSFTTTAEREI-VRDIKEKLCY 186
D TD + +KI + T + ER I VRD+K+ +CY
Sbjct: 6 DFTDLIRIKIKILHSTTHTLSVERTIPVRDLKQDICY 42
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 340 ESCGIHETVYNSIMKCD-VDIRKDLYANTVMSGGTTMYPGIADRMQK 477
E G+ E + +SI+ +D+R+ L+++ + GG + G+ +++
Sbjct: 458 EKIGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEE 504
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 340 ESCGIHETVYNSIMKCD-VDIRKDLYANTVMSGGTTMYPGIADRMQK 477
E G+ E + +SI+ +D+R+ L+++ + GG + G+ +++
Sbjct: 470 EKIGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEE 516
>At1g69670.1 68414.m08018 cullin, putative contains similarity to
Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
[Homo sapiens]; contains Pfam profile PF00888: Cullin
family
Length = 732
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 25 IYEGYALPHAILRLDLAGRDLTD-----YLMKILTERGYSFTTTAE 147
++E Y H RL L+G+ ++D ++K+ TE GY FT+ E
Sbjct: 418 VFEKYYKQHLAKRL-LSGKTVSDDAERNLIVKLKTECGYQFTSKLE 462
>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
contains Pfam profile PF00888: Cullin family
Length = 732
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 25 IYEGYALPHAILRLDLAGRDLTD-----YLMKILTERGYSFTTTAE 147
++E Y H RL L+G+ ++D ++K+ TE GY FT+ E
Sbjct: 418 VFEKYYKQHLAKRL-LSGKTVSDDAERSLIVKLKTECGYQFTSKLE 462
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,656,416
Number of Sequences: 28952
Number of extensions: 207420
Number of successful extensions: 703
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -