Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I07
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 250 4e-67
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 246 6e-66
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 225 1e-59
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 198 2e-51
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 107 4e-24
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 5e-11
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 43 1e-04
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 39 0.002
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.42
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 1.7
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2) 28 3.9
SB_11313| Best HMM Match : RVT_1 (HMM E-Value=2.1e-18) 28 3.9
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 27 6.9
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 27 6.9
SB_6746| Best HMM Match : rve (HMM E-Value=2.4) 27 6.9
SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4) 27 9.1
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 250 bits (612), Expect = 4e-67
Identities = 115/139 (82%), Positives = 125/139 (89%)
Frame = +3
Query: 24 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 203
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 204 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 383
MNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+S
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 384 SMVLTKMKETAEAYLGKTV 440
SMVLTKMKETAEAYLG V
Sbjct: 121 SMVLTKMKETAEAYLGAKV 139
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 246 bits (602), Expect = 6e-66
Identities = 113/139 (81%), Positives = 127/139 (91%)
Frame = +3
Query: 24 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 203
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 204 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 383
+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+S
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEIS 120
Query: 384 SMVLTKMKETAEAYLGKTV 440
SMVL KMKETAEAYLG+ V
Sbjct: 121 SMVLGKMKETAEAYLGQKV 139
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 225 bits (551), Expect = 1e-59
Identities = 115/161 (71%), Positives = 124/161 (77%), Gaps = 25/161 (15%)
Frame = +3
Query: 24 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 203
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 204 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV- 380
MNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 381 ------------------------SSMVLTKMKETAEAYLG 431
SSMVL KMKETAEAYLG
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLG 161
Score = 36.7 bits (81), Expect = 0.008
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 375 EVSSMVLTKMKETAEAYLG 431
++SSMVL KMKETAEAYLG
Sbjct: 211 QISSMVLNKMKETAEAYLG 229
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 198 bits (482), Expect = 2e-51
Identities = 95/144 (65%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
Frame = +3
Query: 12 KRNKMAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAA 188
K + +GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD A
Sbjct: 694 KEQREKVGTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGA 753
Query: 189 KNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFF 368
KNQ+ NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF
Sbjct: 754 KNQLTTNPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFA 813
Query: 369 PEEVSSMVLTKMKETAEAYLGKTV 440
EE+S+MVLTKMKETAEAYLGK V
Sbjct: 814 AEEISAMVLTKMKETAEAYLGKKV 837
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 107 bits (257), Expect = 4e-24
Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
Frame = +3
Query: 30 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 203
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 204 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKIKVAYKGEDKTFFPEEV 380
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 381 SSMVLTKMKETAEAYLGKTV 440
V+ K++ AE L TV
Sbjct: 150 GGYVIKKLRTMAERNLTTTV 169
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 64.1 bits (149), Expect = 5e-11
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +3
Query: 207 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 383
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 384 SMVLTKMKETAEAYL 428
+M+ T++K TAE L
Sbjct: 178 AMLFTRLKTTAEIAL 192
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 42 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 197
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 15 RNKMAKA-PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI 176
RN + KA A+ I T+ G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 56 RNPICKAREAILIARAGTFRTRWPVLDGNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +3
Query: 330 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTV 440
I V GE ++F PE++S++VL ++K AEA+LG+ V
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAV 38
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.42
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 102 EIIANDQGNRTTPSYVAFT-DTERL 173
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = -2
Query: 293 PVFHVGLYGGIFKFASDKTFGIKDGVIGVHRNLVLGCITDKTLSVGERNVRGRSSVA 123
PV H+ + G+F +K + + GV + R+ VLG +T ++S G R++ RSS++
Sbjct: 228 PVIHLDPFLGLFYNKVNKLW--RKGVNDMSRDSVLGNVTLVSVSGGFRDLLVRSSIS 282
>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 537
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = -2
Query: 302 LERPVFHVGLYGGIFKFASDKTFGIKDGVIGVHRNLVLGCITDKTLSVGERNVRGRSSVA 123
+ R F + + +F+ D+TF DGV+GV ++V + KT +RN++G
Sbjct: 212 VSRMPFGLRMSQDVFQAKIDQTFEGCDGVVGVADDIV---VFGKTAEEHDRNLKGMIKRC 268
Query: 122 LVIGDDLN 99
+G LN
Sbjct: 269 QKMGLKLN 276
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 418 SAVSFIFVSTIELTSSGKKVLSSPLYATLIFGLPPSLTTSKGQCFMSACTVASSNLRPIR 239
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 238 RLASKMVL 215
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
Length = 451
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 292 QCFMSACTVASSNLRPIRRLASKMVLLGFIATWFLAASPIRRSVSVNAT 146
QCF+S C + S + I R+ L TW + + + S +AT
Sbjct: 169 QCFLSVCDLCCSLMTQIPRMRHTWDFLEHAPTWISSQTSMSFSAITDAT 217
>SB_11313| Best HMM Match : RVT_1 (HMM E-Value=2.1e-18)
Length = 284
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -2
Query: 299 ERPVFHVGLYGGIFKFASDKTFGIKDGVIGVHRNLVLGCITDKTLSVGERNVRG 138
+R F + + +F+ D+TF DGV+G+ ++V + KT +RN++G
Sbjct: 185 KRMPFGLTMSQDVFQAKIDQTFEGCDGVVGIADDIV---VFGKTAEEHDRNLKG 235
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 27.1 bits (57), Expect = 6.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -2
Query: 395 EHHRADLLREEG--LVLTLV---CHLDLWFTSITDNLERPVFHVG 276
E +LLR G LV+ L+ LD WFT L++PV VG
Sbjct: 497 EDKEEELLRRRGDLLVVMLLGDLAELDAWFTETRRLLDQPVIVVG 541
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 27.1 bits (57), Expect = 6.9
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 439 TVLPR*ASAVSFIFVSTIELTSSGKKVLSSPLYATLI--FGLP 317
TV R +S+VS V T L+ K+L + + TLI FGLP
Sbjct: 116 TVHKRRSSSVSSHIVDTWRLSKDEAKILPTVIVGTLIIVFGLP 158
>SB_6746| Best HMM Match : rve (HMM E-Value=2.4)
Length = 488
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 186 AKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 281
AKNQ+ NP N + + L FED+ ++ D
Sbjct: 429 AKNQIGQNPTNHAKNQRYLKSIVFEDSLIRND 460
>SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)
Length = 745
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 141 RA*FCCPGHWR*SQLSHAGTHPHKSRLCPDRYQLLV 34
RA C P +R + P KS C D Y +LV
Sbjct: 43 RACSCLPNFYRLDRFGRCSPCPDKSLKCEDDYAILV 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,432,749
Number of Sequences: 59808
Number of extensions: 327372
Number of successful extensions: 997
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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