Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I06
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   183   2e-47
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.71 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.6  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   3.8  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.8  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   8.7  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   8.7  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  183 bits (445), Expect = 2e-47
 Identities = 86/110 (78%), Positives = 100/110 (90%)
 Frame = +2

Query: 119 EKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRK 298
           +K Q   S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PT +L+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 299 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 448
           TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 101  VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 250
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 92  AAVVSGKDIEKPQAEISPIHRIRITLTSRNVRS 190
           A V +  D+EKPQ +++   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 236 KLRVKGPVRMPTNV---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 406
           K R  G +  P  V   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 407 INIEPGVEVEVTI 445
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 217 QWSQETKTPCKGSSPNADQCSPHH 288
           Q  ++ K  C G  P+ DQC  H+
Sbjct: 73  QSCRKKKVKCSGERPSCDQCLKHN 96


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 341 MRIHKRVIDLHSPSEIVKQITSINIEPGV 427
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 352 VDAHLESVPSLGTLTARCFTCCDAENIG 269
           + A L+++ SLG       TC  AEN G
Sbjct: 52  IQADLKTMTSLGVYGMSAITCLVAENAG 79


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 293 RKTPCGEGSKTWDRFQM 343
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,452
Number of Sequences: 5004
Number of extensions: 43641
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)