Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I06
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514          169   1e-42
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294          168   2e-42
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923          167   3e-42
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    52   4e-07
01_05_0790 + 25253363-25254136,25259037-25259897                       28   5.0  
07_01_0344 - 2490700-2493249                                           27   6.6  
01_06_1839 - 40245862-40246022,40246872-40246977,40247868-402479...    27   6.6  

>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score =  169 bits (411), Expect = 1e-42
 Identities = 79/121 (65%), Positives = 98/121 (80%)
 Frame = +2

Query: 89  AAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMP 268
           A   + G  +   +A    ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+P
Sbjct: 9   AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68

Query: 269 TNVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 448
           T VL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEVEVTIA
Sbjct: 69  TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128

Query: 449 D 451
           D
Sbjct: 129 D 129


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score =  168 bits (409), Expect = 2e-42
 Identities = 83/126 (65%), Positives = 101/126 (80%), Gaps = 4/126 (3%)
 Frame = +2

Query: 86  MAAAVV----SGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKG 253
           MAAA V     G  +   +A    ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKG
Sbjct: 1   MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60

Query: 254 PVRMPTNVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 433
           PVR+PT VL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEV
Sbjct: 61  PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120

Query: 434 EVTIAD 451
           EVTIAD
Sbjct: 121 EVTIAD 126


>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
          Length = 128

 Score =  167 bits (407), Expect = 3e-42
 Identities = 75/101 (74%), Positives = 91/101 (90%)
 Frame = +2

Query: 149 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEGSKTW 328
           HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPT VL ITTRK+PCGEG+ TW
Sbjct: 27  HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86

Query: 329 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 451
           DRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 87  DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
 Frame = +2

Query: 137 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEG 316
           ++P  +IRI L S  V  +E  C  +I  AK    +  GPV +PT         +P    
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388

Query: 317 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 445
              +  F++R H+R+ID+  P ++ +  +  + +  GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431


>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 264 CRPMFSASQHVKHLAVRVPRLGTDSRCASTSV 359
           C P  SA+  +KH A++   LGTD+  A  +V
Sbjct: 211 CGPGGSAAPALKHKALQAEALGTDNAMADVAV 242


>07_01_0344 - 2490700-2493249
          Length = 849

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 153 RWIGEISAWGFSISFPDTTAAA 88
           RWIG+ S   F++S P T A A
Sbjct: 46  RWIGDSSPKNFTLSLPGTVATA 67


>01_06_1839 -
           40245862-40246022,40246872-40246977,40247868-40247949,
           40248337-40248437,40248531-40248568,40248624-40248675
          Length = 179

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 222 PLMRSEQTFSSERTLRDVSVILIRWIGEISAWGFSISFPDTTAAAMLLRYSGRD 61
           P++ SE  +S E+  R V        G++ AWG  + FP T A A   R S R+
Sbjct: 25  PMLNSELHYSQEKNKRKV--------GDVPAWGKPLKFP-TGAEAETDRVSTRE 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,828
Number of Sequences: 37544
Number of extensions: 315183
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)