Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I06
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 8e-41
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.014
SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1) 34 0.059
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 1.7
SB_45262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094) 27 6.8
SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10) 27 9.0
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4) 27 9.0
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 163 bits (396), Expect = 8e-41
Identities = 77/95 (81%), Positives = 87/95 (91%), Gaps = 2/95 (2%)
Frame = +2
Query: 176 RNVRSLEKV--CSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEGSKTWDRFQMRI 349
+ VR+ KV C+DLI GAK++KL+VKGPVRMPT LRITTRKTPCGEGSKTWDR++MRI
Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRI 65
Query: 350 HKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
HKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 66 HKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 34.3 bits (75), Expect(2) = 0.014
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 54 VVYLDRNIATTWQPLSCQERISRSPRLRSHRSIVSGSR*R-HAMYAHWRRSALTSSMEPR 230
VV ++ + +P C R+S +P S RS GS R +H RRS+ +E R
Sbjct: 335 VVNVESALPLITRPSHCSSRVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMR 394
Query: 231 NKNSV*RVQSECRPMFSASQHVKHLAVRVPRLGTDSRCASTS 356
++ S R + + R SAS+ R+P G R S S
Sbjct: 395 DRRSASRDRLQMRNRRSASRD------RIPSSGGRRRSPSPS 430
Score = 21.0 bits (42), Expect(2) = 0.014
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +3
Query: 435 KSPSPTHRHNCQ 470
+SPSP+ +++CQ
Sbjct: 425 RSPSPSEQNSCQ 436
>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
Length = 183
Score = 34.3 bits (75), Expect = 0.059
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 54 VVYLDRNIATTWQPLSCQERISRSPRLRSHRSIVSGSR*R-HAMYAHWRRSALTSSMEPR 230
VV ++ + +P C R+S +P S RS GS R +H RRS+ +E R
Sbjct: 75 VVNVESALPLITRPSHCSSRVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMR 134
Query: 231 NKNSV*RVQSECRPMFSASQHVKHLAVRVPRLGTDSRCASTS 356
++ S R + + R SAS+ R+P G R S S
Sbjct: 135 DRRSASRDRLQMRNRRSASRD------RIPSSGGRRRSPSPS 170
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 110 KDIEKPQAEISPIHRIRITLTSRNVRSLEKVC 205
+ + K Q E + IH + +T ++VRSLE+ C
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRC 694
>SB_45262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 227 KKQKLRVKGPVRMPTNVLRITTRKTP 304
K+ K K PVR P N TT+KTP
Sbjct: 45 KQHKAPKKNPVRSPPNHRAQTTKKTP 70
>SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094)
Length = 436
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 51 KVVYLDRNIATTWQPLSCQERISRSPRLRSH 143
+V + +++ +WQP C ISR + SH
Sbjct: 277 RVTFEQKSLRKSWQPNMCLHDISRDTHVTSH 307
>SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 6.8
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 111 RISRSPRLRSHRSIVSGSR*R-HAMYAHWRRSALTSSMEPRNKNSV*RVQSECRPMFSAS 287
R+S +P S RS GS R +H RRS+ +E R++ S R + + R SAS
Sbjct: 3 RVSPAPSNTSRRSSSRGSVPRPRRSTSHDRRSSSRDRLEMRDRRSASRDRLQMRNRRSAS 62
Query: 288 QHVKHLAVRVPRLGTDSRCASTS 356
+ R+P G R S S
Sbjct: 63 RD------RIPSSGGRRRSPSPS 79
>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 62 SRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEK 199
++P N A+ ++S + +PQA I P+H I + SRN ++ K
Sbjct: 301 NQPAMTLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343
>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.5 bits (58), Expect = 6.8
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Frame = +2
Query: 2 HEAKLYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSRN 181
H +Y S + F RP MA AV SG+ + AE+ + + R+
Sbjct: 42 HRRGIYKDSYGATHRFADFQLRPNICIAMAVAVNSGRKV----AEVGDVVLLFDETLKRS 97
Query: 182 VRSLEKVCSDLINGAKKQK----LRV--KG-PVRMPTNVLRITTRKTPCGEGSKTW 328
+ V +LI G Q +RV +G P+RM V R+ + C EG+ W
Sbjct: 98 EWKMA-VVEELIQGPDGQVRGAVIRVLSRGKPIRMKRPVQRLYPLEVKCAEGAGEW 152
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.5 bits (58), Expect = 6.8
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = +2
Query: 104 SGKDIEKPQAEISPIHRIRITLTSR-NVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVL 280
S + +K ++SP+ RI+ TSR ++ S +DL + K K K P+ P
Sbjct: 124 STRSSKKDPDKVSPLSRIKSPATSRVSLDSDSDDGNDLPSVFTKTKPVWKPPITTPQVNS 183
Query: 281 RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSIN 412
P + + D ++R HKR+ D +S ++ S N
Sbjct: 184 DSEEEDLPSYLSTNSQDT-KIRTHKRIADNNSKISCRSKVDSQN 226
>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
Length = 548
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 226 QETKTPCKGSSPNADQCSPHHNT 294
QE+K CK SSP + +P+H T
Sbjct: 13 QESKNYCKISSPYRHKMAPYHRT 35
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 50 ESCLSRPEYRNNMAAAVVSGKDIEKP 127
+SC P +++ AA VSG +EKP
Sbjct: 1115 KSCAQLPRVMDHVGAACVSGTSMEKP 1140
>SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4)
Length = 494
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Frame = +1
Query: 85 HGSRCRVRKGYREAPG*DL------TDPSYQDHADVTQC 183
HGSRC V+ G + + D D + + H DVT C
Sbjct: 438 HGSRCNVKDGSKSSSSHDKCNRSQEADSTPEPHLDVTDC 476
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,865,979
Number of Sequences: 59808
Number of extensions: 358761
Number of successful extensions: 1058
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -