Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I06
         (510 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   196   3e-50
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   196   3e-50
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   196   3e-50
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   196   3e-50
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   124   2e-28

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  196 bits (479), Expect = 3e-50
 Identities = 96/116 (82%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
 Frame = +2

Query: 110 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI 286
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPT  LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 287 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  196 bits (479), Expect = 3e-50
 Identities = 96/116 (82%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
 Frame = +2

Query: 110 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI 286
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPT  LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 287 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  196 bits (479), Expect = 3e-50
 Identities = 96/116 (82%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
 Frame = +2

Query: 110 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI 286
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPT  LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 287 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  196 bits (479), Expect = 3e-50
 Identities = 96/116 (82%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
 Frame = +2

Query: 110 KDIEKPQAEIS-PIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI 286
           KD  K   E    IHRIRITLTSRNV+SLEKVC+DLI GAK++ L+VKGPVRMPT  LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 287 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  124 bits (299), Expect = 2e-28
 Identities = 56/60 (93%), Positives = 58/60 (96%)
 Frame = +2

Query: 248 KGPVRMPTNVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 427
           KGPVRMPT  LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,106,734
Number of Sequences: 237096
Number of extensions: 1741942
Number of successful extensions: 4133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4132
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)