Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I06
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 173 5e-44
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 29 2.0
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 2.6
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 2.6
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 2.6
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 29 2.6
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 2.6
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 2.6
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 2.6
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 27 7.9
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 7.9
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 7.9
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 27 7.9
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 27 7.9
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 173 bits (422), Expect = 5e-44
Identities = 77/101 (76%), Positives = 94/101 (93%)
Frame = +2
Query: 149 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEGSKTW 328
HRIR+TLTS+NV+ LEKVC+ LI+GAK + L VKGP+RMPT VLRITTRKTPCGEGSKTW
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 329 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 451
DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77 DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 122 KPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKK 232
+ +A+ SP HRI +TS+N CS L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 28.7 bits (61), Expect = 2.6
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 14 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSR--NVR 187
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 767 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 826
Query: 188 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 328
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 827 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 869
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 28.7 bits (61), Expect = 2.6
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 14 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSR--NVR 187
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 981 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1040
Query: 188 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 328
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1041 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1083
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 28.7 bits (61), Expect = 2.6
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 14 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSR--NVR 187
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1117 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1176
Query: 188 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 328
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1177 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1219
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 28.7 bits (61), Expect = 2.6
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 14 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSR--NVR 187
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1166 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1225
Query: 188 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 328
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1226 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1268
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 28.7 bits (61), Expect = 2.6
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 14 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSR--NVR 187
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1158 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1217
Query: 188 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 328
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1218 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1260
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 28.7 bits (61), Expect = 2.6
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 14 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSR--NVR 187
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1169 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1228
Query: 188 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 328
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1229 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1271
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 28.7 bits (61), Expect = 2.6
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 14 LYSGSALSNF*FESCLSRPEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSR--NVR 187
+Y G+ S E S E ++ + S A ISP HR ++ L + +V+
Sbjct: 1170 MYGGAQSSEVSAEILPSPQEENSSKETSSSSSSSSSSNTAHISPEHRFKVDLDQKFADVK 1229
Query: 188 SLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRI--TTRKTPCGEGSKTW 328
+ DL A Q V+ PV + + L + + PCG+G K+W
Sbjct: 1230 REHEGREDL---AYSQ--MVQHPVTVSADCLEVYNASLSKPCGDG-KSW 1272
>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
F55G11.9 protein.
Length = 1431
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 471 FGSCAYASAMVTSTSTPGSILIEVICFT 388
F S Y +A + +T T GS+L+ V C T
Sbjct: 962 FVSLVYLTASLINTPTKGSLLLYVFCLT 989
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 89 PCCCDIPVEINNF 51
PCC PVEINNF
Sbjct: 88 PCCNGSPVEINNF 100
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 86 MAAAVVSGKDIEKPQAEISPIH 151
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 86 MAAAVVSGKDIEKPQAEISPIH 151
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 128 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 229
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 128 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAK 229
Q+EIS I +IR TL + + K+ SDL G K
Sbjct: 1140 QSEISTIEKIRNTLNGDGYQGMYKLMSDLGLGWK 1173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,209,310
Number of Sequences: 27780
Number of extensions: 258353
Number of successful extensions: 766
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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