Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I06
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ...   175   1e-44
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ...   175   1e-44
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo...   173   4e-44
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ...   173   4e-44
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,...    59   1e-09
At3g27320.1 68416.m03414 expressed protein low similarity to PrM...    27   5.5  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     27   7.3  

>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  175 bits (427), Expect = 1e-44
 Identities = 78/109 (71%), Positives = 97/109 (88%)
 Frame = +2

Query: 128 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPC 307
           +A +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPT VL+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 308 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
           RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
           THALIANA,PID:g1350956
          Length = 122

 Score =  175 bits (427), Expect = 1e-44
 Identities = 78/109 (71%), Positives = 97/109 (88%)
 Frame = +2

Query: 128 QAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPC 307
           +A +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPT VL+ITTRK PC
Sbjct: 14  EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73

Query: 308 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           GEG+ TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 74  GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122


>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
           ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
          Length = 124

 Score =  173 bits (422), Expect = 4e-44
 Identities = 77/106 (72%), Positives = 95/106 (89%)
 Frame = +2

Query: 137 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEG 316
           +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPT VL+ITTRK PCGEG
Sbjct: 19  LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78

Query: 317 SKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           + TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 79  TNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
           ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
          Length = 124

 Score =  173 bits (422), Expect = 4e-44
 Identities = 77/106 (72%), Positives = 95/106 (89%)
 Frame = +2

Query: 137 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRKTPCGEG 316
           +  IH+IRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVRMPT VL+ITTRK PCGEG
Sbjct: 19  LEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEG 78

Query: 317 SKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 454
           + TWDRF++R+HKRVIDL S  ++VKQITSI IEPGVEVEVTIAD+
Sbjct: 79  TNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124


>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
           putative similar to 30S ribosomal protein S10 GB:P02364
           [Escherichia coli] (est matches suggest the N-terminal
           extension)
          Length = 191

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
 Frame = +2

Query: 68  PEYRNNMAAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRV 247
           PE  +  A+ V S   I     +++P  +IRI L S  V  +E  C  +++ A+    + 
Sbjct: 66  PEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKT 125

Query: 248 KGPVRMPTNVLRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPG 424
            GPV +PT        K+P       +  F++R H+R+ID L+  ++ +  +  +++  G
Sbjct: 126 MGPVPLPTKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAG 184

Query: 425 VEVEVTI 445
           V+VEV +
Sbjct: 185 VDVEVKL 191


>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 460

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 7   GKAVLRFSAEQFLI*KLFISTGISQQHGSRCR---VRKGYREAPG*DLTDPSYQDHADVT 177
           G  VL++  +Q  + +   S G S++ G   +   V K   +A G  L +P   +HAD +
Sbjct: 222 GFKVLKWLGKQANLAECNKSMGNSRRPGGEVKKSEVNKHIVDAFGASLVEPWLANHADPS 281

Query: 178 QCTLTG 195
           +C L G
Sbjct: 282 RCVLLG 287


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 197 KVCSDLINGAKKQKL-RVKGPVRMPTNVLRITTRKT--PCGEGSKTWDRFQM-RIHKRVI 364
           +V   L N  K +KL ++  P R+ +N L++    T    G+   + D     R+ KR+I
Sbjct: 255 RVAIQLPNTLKTEKLPKLPPPARIQSNGLKLPMSLTMKSKGQNQDSEDSDSSGRLQKRII 314

Query: 365 DLHSPSEI 388
             H PS++
Sbjct: 315 QPHKPSQM 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,597
Number of Sequences: 28952
Number of extensions: 243596
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)