Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I05
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   177   7e-46
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    31   0.16 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   1.1  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.1  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   6.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.0  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  177 bits (432), Expect = 7e-46
 Identities = 81/122 (66%), Positives = 100/122 (81%)
 Frame = +2

Query: 20  EFGTRVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPF 199
           E   +VI  STDS ++HLA+INT RK+GGLG +NIP+++D SH++SRDYGVL E+ G+ F
Sbjct: 64  ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123

Query: 200 RGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWHPGSKTIKPD 379
           RGLF+ID K  LRQIT+NDLPVGRSV+E LRL+ AFQF ++HGEVCPANWH GS TI  D
Sbjct: 124 RGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI--D 181

Query: 380 TK 385
           TK
Sbjct: 182 TK 183


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +2

Query: 8   PVLQEFGTRVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEET 187
           P LQ + T VI  +TD+      W   +     L   ++P+ISD ++ I R+ G+L    
Sbjct: 135 PCLQSYNTDVIGITTDTVENICQW--KAHLPRAL-QFSLPVISDSNNEICREMGMLHPLG 191

Query: 188 G--IPFRGLFIIDDKQNLRQI 244
           G  +    + IID     R I
Sbjct: 192 GAKLALDAIVIIDSIGRRRDI 212


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = -1

Query: 447 VSGVSGNDKVVGIDEVLLARALVSGLIVLEPGCQLAGQTSPCLSVNWNAWTSLRVSSTDR 268
           +S V G    +G  +V+      +GLI+LE    + G + P  S   N W +L +  T+ 
Sbjct: 30  LSSVGGRSAKLG--QVIHHCFYKTGLIILESRLNVFGTSRPRESSKNNKWFNLEIVETEL 87

Query: 267 PTGRSLTVIWRRFCLSSMMKSP 202
              +    IW+   LS   K P
Sbjct: 88  YAEQ--FKIWKNIELSPSRKIP 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 227 QNLRQITVNDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWHPGSKT 367
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKS 140


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 363 LEPGCQLAGQTSPCLSVNWN 304
           L+P  +L   T PC SV WN
Sbjct: 174 LKPKYRLTKHTQPCTSVCWN 193


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 101 GGLGPMNIPIISDKS 145
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,696
Number of Sequences: 5004
Number of extensions: 42591
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)