Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I05
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 127 6e-30
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 83 2e-16
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 56 3e-08
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 48 4e-06
02_05_0263 - 27257150-27259213 29 2.0
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 29 2.0
11_06_0377 - 22900042-22900452,22900527-22902236 28 4.7
09_02_0181 - 5425833-5426527,5426667-5429397 28 4.7
08_01_0839 + 8210084-8210341,8210499-8210582,8211345-8211461,821... 28 4.7
06_01_0115 - 901385-901495,902134-902163,902847-902927,903019-90... 28 4.7
03_02_0383 + 7966929-7968951,7969085-7969104 28 6.2
01_06_1548 + 38157796-38157955,38158771-38159252 28 6.2
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548... 27 8.2
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 27 8.2
02_03_0183 + 16106205-16106474 27 8.2
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 127 bits (307), Expect = 6e-30
Identities = 57/109 (52%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Frame = +2
Query: 62 FTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQ 241
F+HLAW+ T RK GGLG + P+ISD + IS+ +GVL + GI RGLFIID + ++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 242 ITVNDLPVGRSVEETLRLVQAFQFT-DKHGEVCPANWHPGSKTIKPDTK 385
T+N+L +GRSV+ET+R +QA Q+ D EVCPA W PG K++KPD K
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPK 320
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = +2
Query: 167 GVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKH-GEVCPA 343
GV + GI RGLFIID + ++ T+N+L +GRSV+ETLR +QA Q+ ++ EVCPA
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPA 132
Query: 344 NWHPGSKTIKPDTK 385
W PG K++KPD K
Sbjct: 133 GWKPGEKSMKPDPK 146
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Frame = +2
Query: 26 GTRVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLD----EETG- 190
G +++ S D +H WI + PI++D S + ++D + G
Sbjct: 99 GVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGG 158
Query: 191 -IPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWHPGSKT 367
+P R L I+ + ++ + VGR+++E +R V A Q KH P NW PG +
Sbjct: 159 HLPSRALHIVGPDKKVKLSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERV 218
Query: 368 IKP 376
+ P
Sbjct: 219 VIP 221
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 48.4 bits (110), Expect = 4e-06
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Frame = +2
Query: 26 GTRVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLD---EETG-- 190
G +++ S D +H WI + PI++D R ++D ++T
Sbjct: 64 GVKLLGFSCDDVESHKDWIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGG 123
Query: 191 -IPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWHPGSKT 367
+P R L I+ + ++ + GR++ E LR A +H P NW PG +
Sbjct: 124 ELPNRALHIVGPDKKVKLSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERV 183
Query: 368 IKP----DTKARAR 397
+ P D +A+AR
Sbjct: 184 VIPPGVSDEEAKAR 197
>02_05_0263 - 27257150-27259213
Length = 687
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -3
Query: 388 GLGVWLDSLRTGMPVS---GADLAVLVRELERLDQPQGLLD*PSDRQIV 251
G G+ +DSL+ G+ G+ L VL +L R+D QG+ D+ +V
Sbjct: 48 GKGMHVDSLKFGLSGDKFIGSSLIVLYSKLHRMDDSQGVFKEIIDKDVV 96
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 89 SRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNL 235
++K+ G G N+P D R ++DY +DE+ +P F I D++ +
Sbjct: 64 AKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGM 112
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 223 QTEPPPDH-RQRSAGRTVSRGDPEAGPGVPVHGQAR-RGLP 339
+ EPP R RS R +RGD E G G+P +A GLP
Sbjct: 455 EEEPPVRRGRARSPLRLQARGDAEDGEGLPFRLRAHGEGLP 495
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 280 GDPEAGPGVPVHGQARRG 333
G P AG G P HG RRG
Sbjct: 1006 GAPMAGSGFPTHGSGRRG 1023
>08_01_0839 +
8210084-8210341,8210499-8210582,8211345-8211461,
8211850-8211945,8212164-8212427,8212522-8212704
Length = 333
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 317 DKHGEVCPANWHPGSKTIKPDTKAR 391
DKHG +CP P S T+ + + R
Sbjct: 285 DKHGHICPVTCQPVSSTVLRNERIR 309
>06_01_0115 -
901385-901495,902134-902163,902847-902927,903019-903084,
903207-903284,904708-904791,904881-904970,905069-905345,
905765-905973
Length = 341
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 206 LFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWHPGSKTI 370
+ +ID + +I N V SVEE + +Q + T K G + A H G+ T+
Sbjct: 263 VLVIDQGTIIDRIDYNIQNVAASVEEGYKQLQKAERTQKKGGMVSACMHGGAVTL 317
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 439 SKWQ**SSWHRRSTPGAG-LGVWLDSLR 359
S+W+ SW RRS+ G G + W+D +R
Sbjct: 482 SRWRMMKSWSRRSSNGNGSIDWWIDGVR 509
>01_06_1548 + 38157796-38157955,38158771-38159252
Length = 213
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 105 PPCLREVLIQAKWVKCESVEAA 40
PP R +QAKW+ C V+A+
Sbjct: 137 PPWRRPSYVQAKWLPCRGVQAS 158
>11_04_0291 -
15851647-15852252,15853995-15854136,15854666-15854881,
15854957-15855052,15855147-15855259,15856516-15856727,
15856842-15856939,15857066-15857186,15857291-15857508,
15857657-15857837,15857919-15858207,15858303-15858367,
15858480-15858591
Length = 822
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 266 GRSVEETLRLVQAFQFTDKHGEV--CPAN 346
G S+EE L LV F D HGE+ C +N
Sbjct: 559 GGSMEEMLNLVALFDKWDDHGEIGFCSSN 587
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 262 GRTVSRGDPEAGPGVPVHGQARRGLPR 342
G + D G PVHG+ RRG R
Sbjct: 129 GEEEGKEDENRGENAPVHGEGRRGASR 155
>02_03_0183 + 16106205-16106474
Length = 89
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 125 PIISDKSHRISRDYGVLDEETGIP 196
P+ S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,661,359
Number of Sequences: 37544
Number of extensions: 355055
Number of successful extensions: 1143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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