Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I05
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   175   3e-44
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             152   2e-37
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   8e-15
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   6e-14
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                43   2e-04
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)               31   0.68 
SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           31   0.90 
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           29   2.7  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             29   3.6  
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            28   4.8  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   28   4.8  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   6.3  
SB_50001| Best HMM Match : Carn_acyltransf (HMM E-Value=0.077)         27   8.4  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  175 bits (425), Expect = 3e-44
 Identities = 78/111 (70%), Positives = 93/111 (83%)
 Frame = +2

Query: 35  VIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFI 214
           VIA S DS ++HLAW N  RK+GG+G +NIPI+SD + +IS+DYGVL E+ G+  RGLFI
Sbjct: 118 VIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFI 177

Query: 215 IDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWHPGSKT 367
           IDDK  LRQIT+NDLPVGRSV+ETLRL+QAFQFTDKHGEVCPA W PG+ T
Sbjct: 178 IDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  152 bits (369), Expect = 2e-37
 Identities = 68/95 (71%), Positives = 81/95 (85%)
 Frame = +2

Query: 83  NTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLP 262
           N  RK+GG+G +NIPI+SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQIT+NDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 263 VGRSVEETLRLVQAFQFTDKHGEVCPANWHPGSKT 367
           VGRSV+ETLRL+QAFQFTDKHGEVCPA W PG+ T
Sbjct: 63  VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +2

Query: 203 GLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKH 325
           GLFIIDDK  LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 29  TRVIAASTDSHFTHLAW 79
           T V+  S DS FTHLAW
Sbjct: 118 TEVVGCSVDSVFTHLAW 134


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 32/39 (82%), Positives = 34/39 (87%)
 Frame = +2

Query: 263 VGRSVEETLRLVQAFQFTDKHGEVCPANWHPGSKTIKPD 379
           VGRSV+ETLRLVQAFQ+TDKHGEVCPA W PG  TI PD
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPD 39


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
 Frame = +2

Query: 47  STDSHFTHLAWINTSRKQG-----GLGPMNIPIISDKSHRISRDYGVLD----EETGIPF 199
           S D   +H  W+    K            N PII+D+   ++   G++D    +  G+P 
Sbjct: 5   SCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGLPL 64

Query: 200 --RGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWHPG 358
             R +FII   + L+   +     GR+ +E LR++ + Q T       P +W  G
Sbjct: 65  TCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLG 119


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 232 PPPDHRQRSAGRTVSRGDPEA-GP--GVPVHGQARRGLPR*LASRF*DYQARHQGP 390
           PP  H  R  G    RG P + GP  G P+ G  RRG P    S +  Y  R+  P
Sbjct: 78  PPRGHPMRGRGAPYGRGGPPSRGPPRGPPLPGPPRRGPPPDRDSGYGGYGDRYDRP 133


>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
          Length = 684

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 485 HTSCPVWPISPTPACGIAQYAISNCSCHLS 574
           H SCP +P+S    CG+AQ        HLS
Sbjct: 413 HQSCPSFPLSCPNNCGVAQIPRGEVELHLS 442


>SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -3

Query: 421 SSWHRRSTPGAGLGVWLDSLRTGMPVSGADLAVLVRELERLDQPQGLLD*PSDRQIVD 248
           +SWH    P AG   + D      P+S  + A L  +  R  + QG L  P D +IV+
Sbjct: 31  ASWHHPQAPLAGFQGYNDGYNYAQPLSDGERAKLEVKFPRFYRVQGTLSLPYD-EIVE 87


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +2

Query: 131 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGR-SVEE--TLRLVQ 301
           + DKS    R +  LD+  GI   G  ++ +  N+ +IT+N+    +  ++   TL  V 
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194

Query: 302 AFQFTDKHG 328
            F F+DKHG
Sbjct: 195 EFSFSDKHG 203


>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 35  VIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPF 199
           VI   TDS ++    I+   + GGLG     +IS +     RD G+   ETG+ F
Sbjct: 65  VILGPTDSLYSECTLIDKGWRTGGLGEGLNGMISTRKRARKRDLGM---ETGLEF 116


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -3

Query: 421  SSWHRRSTPGAGLGVWLDSLRTGMPVSGADLAVLVRELERLDQPQGLLD*PSDRQIVD 248
            +SWH    P A    + D      P+S  + A L  +  R  + QG L  P D +IV+
Sbjct: 837  ASWHHPQAPLASFQGYNDGYNYAQPLSDGERAKLEVKFPRFYRVQGTLSLPYD-EIVE 893


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -3

Query: 292 PQGLLD*PSDRQI-VDGDLAEVLFVVDDEESAEGDAGLLVEDAVIARDAVRLVAYYRYVH 116
           P+GL D      + V GD+     V +   S  GD   +VED  I  D  R + +    H
Sbjct: 315 PEGLTDKTKVPFLSVGGDIGIRKTVHEGSSSLSGD--YIVEDITIGEDTFRRLVFLINPH 372

Query: 115 G--TETALFTGGVDPSQVGEV 59
           G  +E  LFT      + G +
Sbjct: 373 GIQSEAKLFTAKDGKKKAGHI 393


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = -1

Query: 432 GNDKVVGIDEVLLARALVSGLIVLEPGCQLAGQT-SPCLSVNWNA-WTSLRVSSTDRPTG 259
           GN   +GI    L     S  IV  P C   GQT S   +V W   +T +R       T 
Sbjct: 369 GNCSEIGITSRALKMTWTSP-IVTSPRC---GQTPSAASTVFWICKYTQVRGEDHMAATR 424

Query: 258 RSLTVIWRRFCLSSMMKSPRKGMPVSSSRTP*SREMRCDLS 136
           R LT   RR C+++     RK       ++  SRE R D+S
Sbjct: 425 RILTQD-RRLCINAGSHERRKRKRRRKRKSHTSRENRLDIS 464


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 137 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TVND 256
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_50001| Best HMM Match : Carn_acyltransf (HMM E-Value=0.077)
          Length = 240

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 23/101 (22%), Positives = 41/101 (40%)
 Frame = +2

Query: 32  RVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLF 211
           R+   +++SH     +   + K   L  M+ P+IS     + R   ++  E  +P   + 
Sbjct: 3   RLFRVASESHM----FCRLAAKMPKLNAMSKPVISATGKFMPRHLSMMALENDLPKLPVP 58

Query: 212 IIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGEV 334
            +DD  +     +  L      E T  LV  F+  D  GE+
Sbjct: 59  ALDDTMDKYLNAIRPLINDDDFENTQELVNEFRKKDGIGEI 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,120,354
Number of Sequences: 59808
Number of extensions: 371763
Number of successful extensions: 923
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)