Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I05
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...   138   2e-33
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat...   138   3e-33
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati...    50   1e-06
At3g58950.1 68416.m06569 F-box family protein contains F-box dom...    31   0.56 
At2g27300.1 68415.m03281 no apical meristem (NAM) family protein...    28   5.2  
At2g16970.1 68415.m01955 expressed protein  ; expression support...    28   5.2  
At4g16146.1 68417.m02449 expressed protein                             27   6.8  
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf...    27   9.0  

>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score =  138 bits (335), Expect = 2e-33
 Identities = 62/124 (50%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
 Frame = +2

Query: 17  QEFGTRVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIP 196
           ++  T V+  S DS F+HLAW+ T RK GGLG +N P+ISD +  IS+ +GVL  + GI 
Sbjct: 134 EKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIA 193

Query: 197 FRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKH-GEVCPANWHPGSKTIK 373
            RGLFIID +  ++  T+N+L +GRSV+ET+R +QA Q+  ++  EVCPA W PG K++K
Sbjct: 194 LRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKSMK 253

Query: 374 PDTK 385
           PD K
Sbjct: 254 PDPK 257


>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
           very strong similarity to SP|Q96291 2-cys peroxiredoxin
           BAS1, chloroplast precursor {Arabidopsis thaliana};
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 273

 Score =  138 bits (333), Expect = 3e-33
 Identities = 61/124 (49%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
 Frame = +2

Query: 17  QEFGTRVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIP 196
           ++  T V+  S DS F+HLAW+ T RK GGLG +N P++SD +  IS+ +GVL  + GI 
Sbjct: 141 EKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQGIA 200

Query: 197 FRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKH-GEVCPANWHPGSKTIK 373
            RGLFIID +  ++  T+N+L +GRSV+ET+R +QA Q+  ++  EVCPA W PG K++K
Sbjct: 201 LRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMK 260

Query: 374 PDTK 385
           PD K
Sbjct: 261 PDPK 264


>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
           identical to peroxiredoxin (Rehydrin homolog)
           [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family
          Length = 216

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
 Frame = +2

Query: 26  GTRVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRG 205
           G +++  S D   +H  WI           +N PII+D +  I     ++D     P R 
Sbjct: 64  GVKLLGLSCDDVQSHKDWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNMIDPIENGPSRA 123

Query: 206 LFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQFTDKHGE--VCPANWHPGSKTI 370
           L I+     ++   +     GR+++E LR + +     KH      P NW P    +
Sbjct: 124 LHIVGPDSKIKLSFLYPSTTGRNMDEVLRALDSLLMASKHNNKIATPVNWKPDQPVV 180


>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 117 MGPRPPCLREVLIQAKWVKCESVEAAITLVP 25
           +GP  P L+ ++I + W++C+++E  +   P
Sbjct: 99  LGPVLPMLKTLIIDSAWIRCDTIETFLPTFP 129


>At2g27300.1 68415.m03281 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 335

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 268 SDRQIVDGDLAEVLFVVDDEESAEGDA-GLLVEDAVIARDAVRLVA 134
           S+ QI +GD+AE   VV+D+   + D    ++ D +I  D   L A
Sbjct: 194 SEHQIPNGDIAESSNVVEDQADTDDDCYAEILNDDIIKLDEEALKA 239


>At2g16970.1 68415.m01955 expressed protein  ; expression supported
           by MPSS
          Length = 414

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -1

Query: 420 VVG-IDEVLLARALVSGL---IVLEPGCQLAGQTSPCLSVNWNAW 298
           ++G I ++ +   LVS +    VL  G  +    + CLSV+W+AW
Sbjct: 258 IIGSISQLFILPKLVSAIGERRVLSTGLLMDSVNAACLSVSWSAW 302


>At4g16146.1 68417.m02449 expressed protein
          Length = 102

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 89  SRKQGGLGPMNIPIISDKSHRI---SRDYGVLDEETGIPFRGLFIID 220
           + K GGL P   P+IS  S R    S D+ +L +E  I  R +  I+
Sbjct: 23  ANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIE 69


>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 825

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 423 KVVGIDEVLLARALVSGLIVLEPGCQLAGQTSPCLSVNWNAWTSLRVSSTDR 268
           K V +D VL+  A V GL   +P C   G     L ++W+    L  SS D+
Sbjct: 440 KSVSLDNVLVPEA-VFGLSE-KPVCSFVGHLDDVLDLSWSKSQHLLSSSMDK 489


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,494
Number of Sequences: 28952
Number of extensions: 252222
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)