Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I04
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    36   0.002
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    36   0.004
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    29   0.28 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    28   0.84 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.9  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    26   2.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   5.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 281  WHRRHDYWLLAGIVTHGYGRWQDIQND 361
            W  + D  LLAGI  HG+G WQ I+ND
Sbjct: 1132 WGIKEDSMLLAGINKHGFGCWQAIKND 1158


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 281  WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMD 400
            W  R D  LL+GI  HG+G W +I++D    + ++ F  D
Sbjct: 1123 WGPREDSMLLSGICKHGFGAWLEIRDDPELKMKDKIFLED 1162


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 233 WLNEERAA-APGREYEIWHRR 292
           WLNE + +  PG  Y IWHR+
Sbjct: 80  WLNEPKESLTPGNPYVIWHRK 100


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIIN 382
           W  +    LL G   HG G W+ I  D RF   N
Sbjct: 58  WTEKETNDLLRGCQIHGVGNWKKILLDERFHFTN 91


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 327 TATGAGRTYKTTCGSLSSTNRSKWTSAMGTSSRLRISS 440
           T++ A  +  T+  SL+S++ +  TSA  TSS L  SS
Sbjct: 76  TSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSS 113


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 197 IADGGFTELHTLWLNEERAAAPGREY 274
           I++  FT+L  LWL + RA  P  ++
Sbjct: 50  ISEPKFTQLMELWLEKSRAEVPDADF 75


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 239 NEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW 343
           N+ +A+A    + +W RR    LL   +    GRW
Sbjct: 224 NKFKASAENAFFSVWKRRSGIGLLGNSIDVLSGRW 258


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 327 TATGAGRTYKTTCGSLSSTNRSKWTSAMGTSSRLRISS 440
           +++ +  ++ +T  S SST+ S  TS+  +SSR   SS
Sbjct: 360 SSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,046,883
Number of Sequences: 5004
Number of extensions: 16773
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)