Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I04
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 35 0.030
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853... 31 0.49
01_06_0439 + 29398980-29399190,29399910-29400010 30 0.85
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 30 1.1
01_05_0530 + 22984672-22984821,22985444-22985676,22986659-229867... 29 1.5
12_02_1092 - 26011445-26012071,26012826-26014022,26014083-260142... 29 2.0
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 29 2.0
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 2.0
02_03_0384 + 18389895-18390439,18392056-18392341 29 2.0
06_01_1204 + 10397131-10398498 28 4.5
>06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 35.1 bits (77), Expect = 0.030
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 206 GGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQND 361
G T+L +L E + G +W D LL ++ HGY RWQ I +D
Sbjct: 1063 GKITKLFPSYLLYEFPSLVGGR--VWKAEQDLLLLKALIKHGYARWQYISDD 1112
>02_04_0191 -
20783143-20784365,20784453-20784597,20784977-20785345,
20786164-20786250,20786405-20786603,20786733-20786818
Length = 702
Score = 31.1 bits (67), Expect = 0.49
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRF 370
W R D L AG+ HG G W +I + +F
Sbjct: 207 WSREEDMELGAGVQKHGEGNWMEILHKYKF 236
>01_06_0439 + 29398980-29399190,29399910-29400010
Length = 103
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFA 373
G + W + L G++ HG G+W+ IQ D F+
Sbjct: 2 GAPKQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFS 38
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 206 GGFTE-LHTLWLNEERAAAPGREYEIWHRRHDYWLLAG 316
GG+ + H ++L+ A RE E W RR +W G
Sbjct: 85 GGYEDPAHQIFLHAPEALIKNREAEAWERRKSWWRRRG 122
>01_05_0530 +
22984672-22984821,22985444-22985676,22986659-22986743,
22986953-22987036,22987114-22987455
Length = 297
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAII 379
G + W + L AG+ HG G+W+ I D F +
Sbjct: 2 GAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTAL 40
>12_02_1092 -
26011445-26012071,26012826-26014022,26014083-26014286,
26014316-26014385,26014440-26014479,26015566-26015632,
26015718-26015740,26017985-26018081,26018553-26018614,
26018913-26019297,26019924-26020007,26020383-26020467,
26020579-26020790,26020881-26021030
Length = 1100
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFA 373
G + W + L AGI HG G+W+ I D F+
Sbjct: 2 GAPKQKWTAEEESALKAGIAKHGAGKWRTILKDPDFS 38
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 278 IWHRRHDYWLLAGIVTHGYGRWQDI 352
+W D L+ I THGYG W ++
Sbjct: 16 LWSPEEDEKLIRYITTHGYGCWSEV 40
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAI 376
W D L+ GI +GYG W+ I+ D + ++
Sbjct: 1329 WTETDDARLMVGIHWYGYGNWEKIRLDPKLSL 1360
>02_03_0384 + 18389895-18390439,18392056-18392341
Length = 276
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 260 PGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQND 361
P ++ E+W R L GI T+G G W+ + ++
Sbjct: 169 PRKKAEMWTREEHSQFLHGISTYGKGNWKALASE 202
>06_01_1204 + 10397131-10398498
Length = 455
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTH-GYGRWQD 349
R++ + N G H W + AAA G W R D + AG+V G G W D
Sbjct: 325 RQEEVLNHPSVGLFISHCGWNSVTEAAASGVPVVAWPRFADQRVNAGVVARAGIGVWVD 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,535
Number of Sequences: 37544
Number of extensions: 131987
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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