Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I04
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               71   7e-13
SB_35674| Best HMM Match : SH2 (HMM E-Value=0)                         48   3e-06

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 31/46 (67%), Positives = 35/46 (76%)
 Frame = +2

Query: 179  RKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAG 316
            +KFMFNIADGGFTELHTLW  EE+        +IW R+HDYWLLAG
Sbjct: 1746 KKFMFNIADGGFTELHTLWEGEEKRKCD----DIWGRKHDYWLLAG 1787


>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
          Length = 871

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = +2

Query: 179 RKFMFNIADGGFTELHTLWLNEER 250
           +KFMFNIADGGFTELHTLW  EE+
Sbjct: 325 KKFMFNIADGGFTELHTLWEVEEK 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,275,499
Number of Sequences: 59808
Number of extensions: 133076
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)