Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I04
(481 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 184 1e-46
AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase D... 184 1e-46
AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 184 1e-46
AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens ... 184 1e-46
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 184 1e-46
AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein. 184 1e-46
X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein. 182 4e-46
BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein. 182 4e-46
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 182 6e-46
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 182 6e-46
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 182 6e-46
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein. 31 1.6
BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase D... 30 4.8
AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein. 30 4.8
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 184 bits (449), Expect = 1e-46
Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 1702 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 1761
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D R+ I+NEPFK +V GN+LE+KNKFLARRFKLLEQALVI
Sbjct: 1762 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVI 1802
>AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 808
Score = 184 bits (449), Expect = 1e-46
Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 559 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 618
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D R+ I+NEPFK +V GN+LE+KNKFLARRFKLLEQALVI
Sbjct: 619 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVI 659
>AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 184 bits (449), Expect = 1e-46
Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 1702 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 1761
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D R+ I+NEPFK +V GN+LE+KNKFLARRFKLLEQALVI
Sbjct: 1762 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVI 1802
>AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens
cDNA FLJ44024 fis, clone TESTI4026524, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 671
Score = 184 bits (449), Expect = 1e-46
Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 422 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 481
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D R+ I+NEPFK +V GN+LE+KNKFLARRFKLLEQALVI
Sbjct: 482 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVI 522
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 184 bits (449), Expect = 1e-46
Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 1702 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 1761
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D R+ I+NEPFK +V GN+LE+KNKFLARRFKLLEQALVI
Sbjct: 1762 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVI 1802
>AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein.
Length = 978
Score = 184 bits (449), Expect = 1e-46
Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
KFMFNIADGGFTELHTLW NEERAA + G+ Y+IWHRRHDYWLLAGIVTHGY RWQDIQN
Sbjct: 726 KFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQN 785
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D R+ I+NEPFK +V GN+LE+KNKFLARRFKLLEQALVI
Sbjct: 786 DPRYMILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVI 826
>X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein.
Length = 1912
Score = 182 bits (444), Expect = 4e-46
Identities = 81/103 (78%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGRE-YEIWHRRHDYWLLAGIVTHGYGRWQDI 352
+++FMFNIADGGFTELH+LW NEERAA ++ YEIWHRRHDYWLLAGI+ HGY RWQDI
Sbjct: 1693 KQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDI 1752
Query: 353 QNDLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
QND R+AI+NEPFK ++ GNFLEIKNKFLARRFKLLEQALVI
Sbjct: 1753 QNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVI 1795
>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
Length = 1937
Score = 182 bits (444), Expect = 4e-46
Identities = 81/103 (78%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGRE-YEIWHRRHDYWLLAGIVTHGYGRWQDI 352
+++FMFNIADGGFTELH+LW NEERAA ++ YEIWHRRHDYWLLAGI+ HGY RWQDI
Sbjct: 1718 KQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDI 1777
Query: 353 QNDLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
QND R+AI+NEPFK ++ GNFLEIKNKFLARRFKLLEQALVI
Sbjct: 1778 QNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVI 1820
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 182 bits (443), Expect = 6e-46
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
+FMFNIADGGFTELHTLW NEERAA + G+ EIWHRRHDYWLLAGIV HGY RWQDIQN
Sbjct: 1706 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 1765
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D +FAIINEPFK + GNFLE+KNKFLARRFKLLEQALVI
Sbjct: 1766 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVI 1806
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 182 bits (443), Expect = 6e-46
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
+FMFNIADGGFTELHTLW NEERAA + G+ EIWHRRHDYWLLAGIV HGY RWQDIQN
Sbjct: 367 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 426
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D +FAIINEPFK + GNFLE+KNKFLARRFKLLEQALVI
Sbjct: 427 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVI 467
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 182 bits (443), Expect = 6e-46
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Frame = +2
Query: 182 KFMFNIADGGFTELHTLWLNEERAA-APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQN 358
+FMFNIADGGFTELHTLW NEERAA + G+ EIWHRRHDYWLLAGIV HGY RWQDIQN
Sbjct: 1672 RFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQN 1731
Query: 359 DLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
D +FAIINEPFK + GNFLE+KNKFLARRFKLLEQALVI
Sbjct: 1732 DAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVI 1772
>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
Length = 1739
Score = 31.5 bits (68), Expect = 1.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQND 361
W D LL GI HGYG W+ I+ D
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTD 1287
>BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase DNA
binding protein 1 protein.
Length = 1709
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQND 361
W + D LL GI +GYG W+ I+ D
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMD 1279
>AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein.
Length = 1709
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQND 361
W + D LL GI +GYG W+ I+ D
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMD 1279
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,825,970
Number of Sequences: 237096
Number of extensions: 608907
Number of successful extensions: 1562
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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