Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I04
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 149 1e-36
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 149 1e-36
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 149 1e-36
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 146 7e-36
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 146 7e-36
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 32 0.25
U80840-8|AAB37927.1| 235|Caenorhabditis elegans Hypothetical pr... 27 7.0
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 149 bits (361), Expect = 1e-36
Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 6/108 (5%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW---- 343
R + FNI DGG+TELH+LW+NEE+ A G+EYEIWHRRHD+WLLA + +GYGR+
Sbjct: 1480 RLPYKFNICDGGYTELHSLWINEEKVARNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINF 1539
Query: 344 QDIQNDLRFAIINEPFKMDVGN--GNFLEIKNKFLARRFKLLEQALVI 481
QDI ND +F+I+NEPFK + NF ++KNKFLARRFKLLEQ+LVI
Sbjct: 1540 QDIMNDPKFSIVNEPFKQTGADPATNFADVKNKFLARRFKLLEQSLVI 1587
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 149 bits (361), Expect = 1e-36
Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 6/108 (5%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW---- 343
R + FNI DGG+TELH+LW+NEE+ A G+EYEIWHRRHD+WLLA + +GYGR+
Sbjct: 1480 RLPYKFNICDGGYTELHSLWINEEKVARNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINF 1539
Query: 344 QDIQNDLRFAIINEPFKMDVGN--GNFLEIKNKFLARRFKLLEQALVI 481
QDI ND +F+I+NEPFK + NF ++KNKFLARRFKLLEQ+LVI
Sbjct: 1540 QDIMNDPKFSIVNEPFKQTGADPATNFADVKNKFLARRFKLLEQSLVI 1587
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 149 bits (361), Expect = 1e-36
Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 6/108 (5%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRW---- 343
R + FNI DGG+TELH+LW+NEE+ A G+EYEIWHRRHD+WLLA + +GYGR+
Sbjct: 1480 RLPYKFNICDGGYTELHSLWINEEKVARNGKEYEIWHRRHDFWLLAAVAVYGYGRYQINF 1539
Query: 344 QDIQNDLRFAIINEPFKMDVGN--GNFLEIKNKFLARRFKLLEQALVI 481
QDI ND +F+I+NEPFK + NF ++KNKFLARRFKLLEQ+LVI
Sbjct: 1540 QDIMNDPKFSIVNEPFKQTGADPATNFADVKNKFLARRFKLLEQSLVI 1587
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 146 bits (354), Expect = 7e-36
Identities = 67/106 (63%), Positives = 80/106 (75%), Gaps = 4/106 (3%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRWQ--- 346
R F FNI DGGFTELH+LW NEE+ A G+EYEIW+RRHDYWLLAG+V HGYGR+Q
Sbjct: 1493 RPSFKFNICDGGFTELHSLWANEEKVARNGKEYEIWYRRHDYWLLAGVVVHGYGRFQANF 1552
Query: 347 -DIQNDLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
DI ND RF+++NEPFK +IK KF+ RRFKL+EQ+LVI
Sbjct: 1553 NDIINDPRFSVLNEPFKEVGAEATGSDIKAKFMQRRFKLIEQSLVI 1598
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 146 bits (354), Expect = 7e-36
Identities = 67/106 (63%), Positives = 80/106 (75%), Gaps = 4/106 (3%)
Frame = +2
Query: 176 RRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLLAGIVTHGYGRWQ--- 346
R F FNI DGGFTELH+LW NEE+ A G+EYEIW+RRHDYWLLAG+V HGYGR+Q
Sbjct: 1493 RPSFKFNICDGGFTELHSLWANEEKVARNGKEYEIWYRRHDYWLLAGVVVHGYGRFQANF 1552
Query: 347 -DIQNDLRFAIINEPFKMDVGNGNFLEIKNKFLARRFKLLEQALVI 481
DI ND RF+++NEPFK +IK KF+ RRFKL+EQ+LVI
Sbjct: 1553 NDIINDPRFSVLNEPFKEVGAEATGSDIKAKFMQRRFKLIEQSLVI 1598
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMD 400
W R D LL G+ +GYG W+ I+ D + ++ F D
Sbjct: 1156 WSRPDDSALLLGVWKYGYGSWEAIKMDPTLGLADKIFIKD 1195
>U80840-8|AAB37927.1| 235|Caenorhabditis elegans Hypothetical
protein F08D12.4 protein.
Length = 235
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = +2
Query: 239 NEERAAAPGREYEIW--HRRHDYWLLAGIVTHGYGRW----QDIQNDLRFA----IINEP 388
NEERA A R Y+I + R ++ V G+G W +D+ ++++ +
Sbjct: 133 NEERAYATDRAYQIMKQNMRETLFVFPSNVRLGWGVWVDGVKDVAGQVKYSDTTLNLKLG 192
Query: 389 FKMDVGNGNFLEIK 430
+K D+G N++ K
Sbjct: 193 YKWDIGQPNWVSRK 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,957,486
Number of Sequences: 27780
Number of extensions: 95811
Number of successful extensions: 245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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