Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I04
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 41 5e-04
At5g67580.2 68418.m08522 myb family transcription factor contain... 33 0.100
At5g67580.1 68418.m08521 myb family transcription factor contain... 33 0.100
At1g72740.1 68414.m08411 DNA-binding family protein / histone H1... 32 0.17
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 32 0.23
At1g49950.3 68414.m05604 DNA-binding protein, putative contains ... 30 0.93
At1g49950.2 68414.m05603 DNA-binding protein, putative contains ... 30 0.93
At1g49950.1 68414.m05602 DNA-binding protein, putative contains ... 30 0.93
At1g17520.1 68414.m02153 DNA-binding protein, putative contains ... 29 1.2
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 29 1.6
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 29 2.1
At3g49850.1 68416.m05450 myb family transcription factor contain... 28 2.8
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR... 28 3.7
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 5.0
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 27 5.0
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 27 5.0
At2g26960.1 68415.m03234 myb family transcription factor (MYB81)... 27 5.0
At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot... 27 5.0
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 6.5
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 27 6.5
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 27 8.7
At5g40330.1 68418.m04893 myb family transcription factor contain... 27 8.7
At1g58220.1 68414.m06612 myb family transcription factor contain... 27 8.7
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 40.7 bits (91), Expect = 5e-04
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 260 PG-REYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAI 376
PG R +IW HD ++ ++ HGYGRWQ I +D I
Sbjct: 1061 PGLRSGKIWKEEHDKIMIRAVLKHGYGRWQAIVDDKELGI 1100
>At5g67580.2 68418.m08522 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 299
Score = 33.1 bits (72), Expect = 0.100
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAII 379
G + W + L AG++ HG G+W+ I +D F++I
Sbjct: 2 GAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLI 40
>At5g67580.1 68418.m08521 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 299
Score = 33.1 bits (72), Expect = 0.100
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAII 379
G + W + L AG++ HG G+W+ I +D F++I
Sbjct: 2 GAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLI 40
>At1g72740.1 68414.m08411 DNA-binding family protein / histone H1/H5
family protein similar to DNA-binding protein PcMYB1
[Petroselinum crispum] GI:2224897; contains Pfam
profiles PF00538: linker histone H1 and H5 family,
PF00249: Myb-like DNA-binding domain
Length = 287
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFA 373
W + LLAGI HG G+W++I D FA
Sbjct: 8 WTAEEEEALLAGIRKHGPGKWKNILRDPEFA 38
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 31.9 bits (69), Expect = 0.23
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQND 361
W++ D LL GI+ HG+G W+ I+ D
Sbjct: 1386 WNQIDDARLLLGILYHGFGNWEKIRLD 1412
>At1g49950.3 68414.m05604 DNA-binding protein, putative contains
similarity to DNA-binding protein PcMYB1 [Petroselinum
crispum] gi|2224899|gb|AAB61699
Length = 300
Score = 29.9 bits (64), Expect = 0.93
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFA 373
G + W + + L +G++ HG G+W+ I D F+
Sbjct: 2 GAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFS 38
>At1g49950.2 68414.m05603 DNA-binding protein, putative contains
similarity to DNA-binding protein PcMYB1 [Petroselinum
crispum] gi|2224899|gb|AAB61699
Length = 300
Score = 29.9 bits (64), Expect = 0.93
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFA 373
G + W + + L +G++ HG G+W+ I D F+
Sbjct: 2 GAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFS 38
>At1g49950.1 68414.m05602 DNA-binding protein, putative contains
similarity to DNA-binding protein PcMYB1 [Petroselinum
crispum] gi|2224899|gb|AAB61699
Length = 300
Score = 29.9 bits (64), Expect = 0.93
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 263 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFA 373
G + W + + L +G++ HG G+W+ I D F+
Sbjct: 2 GAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFS 38
>At1g17520.1 68414.m02153 DNA-binding protein, putative contains
similarity to DNA-binding protein PcMYB1 [Petroselinum
crispum] gi|2224899|gb|AAB61699
Length = 296
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFA 373
W + LLAG+ HG G+W++I D A
Sbjct: 8 WTAEEEEALLAGVRKHGPGKWKNILRDPELA 38
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 278 IWHRRHDYWLLAGIVTHGYGRWQDI 352
+W D L+ I THGYG W ++
Sbjct: 16 LWSPEEDEKLIRYITTHGYGCWSEV 40
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative strong
similarity to chromatin remodeling factor CHD3 (PICKLE)
[Arabidopsis thaliana] GI:6478518; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1202
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 293 HDYWLLAGIVTHGYGRWQDIQND 361
HD L+ + HGYGRW I D
Sbjct: 1016 HDRILIPAVSKHGYGRWVAIVED 1038
>At3g49850.1 68416.m05450 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 295
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAII 379
W + L AG++ HG G+W+ I +D ++ I
Sbjct: 8 WTPEEETALKAGVLKHGTGKWRTILSDPVYSTI 40
>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 897
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 312 PAS*RTATGA-GRTYKTTCGSLSSTNRSKWTSAM 410
P+ R TG G +K TC + R KWT A+
Sbjct: 110 PSDVRNQTGDFGIAFKETCAHKTEEERQKWTQAL 143
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
similar to disease resistance protein RPP1-WsB
(GI:3860165) [Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 312 PAS*RTATGA-GRTYKTTCGSLSSTNRSKWTSAM 410
P+ R TG GR++ TC + R KW+ A+
Sbjct: 68 PSDVRKQTGEFGRSFNETCSRSTKEKRRKWSQAL 101
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 27.5 bits (58), Expect = 5.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDI 352
W+ + LL I T+G+G W+++
Sbjct: 40 WNADEEILLLEAIATYGFGNWKEV 63
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 27.5 bits (58), Expect = 5.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDI 352
W+ + LL I T+G+G W+++
Sbjct: 111 WNADEEILLLEAIATYGFGNWKEV 134
>At2g26960.1 68415.m03234 myb family transcription factor (MYB81)
contains PFAM profile: myb DNA binding domain PF00249;
identical to cDNA putative transcription factor (MYB81)
mRNA, partial cds GI:3941513
Length = 427
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQND 361
W + D L+A + HG G W +QN+
Sbjct: 25 WTQAEDNLLIAYVDKHGDGNWNAVQNN 51
>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
contains Pfam profile PF00439: Bromodomain
Length = 475
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/54 (18%), Positives = 26/54 (48%)
Frame = +2
Query: 281 WHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGNGNFLEIKNKFL 442
W + L ++ HG G W + ++LR + E F ++ + +++ +++
Sbjct: 14 WGTWEELLLGGAVLRHGTGDWTVVADELRSHSLPEIFTPEICKAKYKDLRKRYV 67
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 305 LLAGIVTHGYGRWQDIQND--LRFAIINEP 388
L GI HGYG W+ I D L+F+ P
Sbjct: 1718 LWIGIRRHGYGNWETILRDPRLKFSKFKTP 1747
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 312 PAS*RTATGA-GRTYKTTCGSLSSTNRSKWTSAM 410
P+ R TG G +K TC + RSKW+ A+
Sbjct: 110 PSHVRKQTGDFGIAFKETCAHKTEEERSKWSQAL 143
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 278 IWHRRHDYWLLAGIVTHGYGRWQDI 352
+W D L + + THG G W DI
Sbjct: 16 LWKPEEDMILKSYVETHGEGNWADI 40
>At5g40330.1 68418.m04893 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 219
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Frame = +2
Query: 248 RAAAPGREYE----IWHRRHDYWLLAGIVTHGYGRWQDIQNDLRFAIINEPFKM------ 397
R G+E+E +W D L+ + THG G W I + ++
Sbjct: 2 RMTRDGKEHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYL 61
Query: 398 --DVGNGNFLEIKNKFLARRFKLL 463
+V GNF + + + R KLL
Sbjct: 62 SPNVNRGNFTDQEEDLIIRLHKLL 85
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 257 APGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQND 361
AP + + W D L+A + HG G W I +
Sbjct: 190 APRKRRKKWSAEEDEELIAAVKRHGEGSWALISKE 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,656,607
Number of Sequences: 28952
Number of extensions: 91012
Number of successful extensions: 362
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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