Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I03
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   6.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    24   8.5  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    24   8.5  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 196 KRLTLRYNVTACTKIYC 246
           K +TLR  V  C KIYC
Sbjct: 192 KTMTLREIVETCEKIYC 208


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 242  YILVHAVTLYLSVSRFTV---S*CMWLHYILVYAVTLYLSVSR 123
            Y+L+ A  +  S+   T+   + C  L+Y +V+ + +YLS +R
Sbjct: 1485 YLLLKAYAMGTSLEELTIPESAKCSPLNYRVVWQLAIYLSKAR 1527


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 355 LHYSDILVYAVNT 317
           LHY D+++Y +NT
Sbjct: 427 LHYHDLILYVINT 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,528
Number of Sequences: 5004
Number of extensions: 25459
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)