Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I03
(423 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 47 7e-06
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 33 0.098
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.91
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81) 27 4.8
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 46.8 bits (106), Expect = 7e-06
Identities = 30/89 (33%), Positives = 44/89 (49%)
Frame = -1
Query: 402 HCILAQVAKLYLSVCRYTTRIS*CMQLTLYLSVSRYTVS*CM*LHCILMLVATIYLSTCS 223
HC + Y S C+ + +++ LY+ VS YT +HC + V T+ +
Sbjct: 1557 HCQCVYIVSAYTSNCQCVYIYTLSVRIRLYI-VSAYTS-----IHCQCVYVYTLSVRIRL 1610
Query: 222 YIVS*RKSLHCILVYVATLYLSVCSYTVS 136
YIVS S+HC VY TL + +C Y VS
Sbjct: 1611 YIVSAYTSIHCQCVYGYTLSVRICLYIVS 1639
Score = 39.1 bits (87), Expect = 0.001
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Frame = -1
Query: 399 CILAQVAKLYLSVCRYTTRIS*CMQLTLYLSVSRYTVS*CM*LHCILMLVATIYLST--- 229
CI +A+ Y S + RI C Q + VS YT C C+ +++ + Y S+
Sbjct: 1500 CIYIVIARAYTSTL--SVRIH-C-QCVYVVIVSGYTSIHCQ---CVYIVIVSAYTSSLPE 1552
Query: 228 -------CSYIVS*RKSLHCILVYVATLYLSVCSYTVS*RKSLQCILVYVASLYFSVR 76
C YIVS S +C VY+ TL + + Y VS S+ C VYV +L +R
Sbjct: 1553 RIRRHCQCVYIVSAYTS-NCQCVYIYTLSVRIRLYIVSAYTSIHCQCVYVYTLSVRIR 1609
Score = 37.9 bits (84), Expect = 0.003
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = -1
Query: 270 HCILMLVATIYLSTCSYIVS*RKSLHCILVYVATLYLSVCSYTVS*RKSLQCILVY 103
+C + + T+ + YIVS S+HC VYV TL + + Y VS S+ C VY
Sbjct: 1570 NCQCVYIYTLSVRIRLYIVSAYTSIHCQCVYVYTLSVRIRLYIVSAYTSIHCQCVY 1625
Score = 32.7 bits (71), Expect = 0.13
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +1
Query: 139 YSVTAYTKI*CSHIH*DTVKRLTLRYNVTACTKIYCSDKH*DTV*LHALRYSVATYAKIK 318
Y V+AYT I C ++ T+ Y V+A T I+C + T+ + Y V+ Y
Sbjct: 1586 YIVSAYTSIHCQCVYVYTLSVRIRLYIVSAYTSIHCQCVYGYTLSVRICLYIVSAYNIYT 1645
Query: 319 C*LHTLRYPSSVATYT 366
+ TL Y S T T
Sbjct: 1646 LSVRTLLYIVSAFTST 1661
Score = 32.7 bits (71), Expect = 0.13
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = -1
Query: 384 VAKLYLSV-CRYTTRIS*CMQLTLYLSVSRYTVS*CM*LHCILMLVATIYLSTCSYIVS* 208
+ Y S+ C+ + +++ LY+ VS Y + + + +L +V+ + ST S ++
Sbjct: 1612 IVSAYTSIHCQCVYGYTLSVRICLYI-VSAYNIY-TLSVRTLLYIVSA-FTSTLSVRIT- 1667
Query: 207 RKSLHCILVYVATLYLSVCSYTVS*RKSLQCILVYVASLYFS 82
S+HC VY+ + S +V R+ QC VY+ S Y S
Sbjct: 1668 --SIHCQCVYIVIVSAYTSSLSVHIRRHCQC--VYIVSAYTS 1705
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = -3
Query: 295 HCILVHVATLYLNACRYNIS*YMQLHCILA*VASLYLSVCGYTIS*CMQLHCILA*VASM 116
+C V++ TL + Y +S Y +HC V +L + + Y +S +HC ++
Sbjct: 1570 NCQCVYIYTLSVRIRLYIVSAYTSIHCQCVYVYTLSVRIRLYIVSAYTSIHCQCVYGYTL 1629
Query: 115 YLSVCRFTV 89
+ +C + V
Sbjct: 1630 SVRICLYIV 1638
Score = 31.1 bits (67), Expect = 0.39
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 114 YIEATYAKIQCNCIH*DIV*PHTLRYSEATYAKIQCNCMY 233
YI + Y I C C++ + Y + Y I C C+Y
Sbjct: 1586 YIVSAYTSIHCQCVYVYTLSVRIRLYIVSAYTSIHCQCVY 1625
Score = 27.5 bits (58), Expect = 4.8
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 419 LSACSITVS*R-KSLNCILVYVATLLGYLSVCS*HFILA*VATLYLSACSYTVS*CLSLQ 243
+SA + T+S R S++C VY+ + Y S S H I +Y+ +YT S + ++
Sbjct: 1655 VSAFTSTLSVRITSIHCQCVYIVIVSAYTSSLSVH-IRRHCQCVYI-VSAYTSSLSVGIR 1712
Query: 242 YILVHAVTLYLSV 204
+V A T LSV
Sbjct: 1713 LYIVSAYTSSLSV 1725
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 33.1 bits (72), Expect = 0.098
Identities = 19/82 (23%), Positives = 35/82 (42%)
Frame = -3
Query: 298 LHCILVHVATLYLNACRYNIS*YMQLHCILA*VASLYLSVCGYTIS*CMQLHCILA*VAS 119
LH + ++V L CRY + + + C + V L C Y + + + C + V
Sbjct: 5 LHAV-IYVDMLLCRYCRYAVMSILSICCYVDIVDMLLCRYCRYVVMSILSICCYVDIVDM 63
Query: 118 MYLSVCRFTVF*CTSLSILIEI 53
+ CR+ V S+ ++I
Sbjct: 64 LLCRYCRYVVMSILSICCYVDI 85
Score = 31.5 bits (68), Expect = 0.30
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = -3
Query: 301 SLHCILVHVATLYLNACRYNIS*YMQLHCILA*VASLYLSVCGYTIS*CMQLHCILA*VA 122
S+ C + V L CRY + + + C + V L C Y + + + C + V
Sbjct: 28 SICCYVDIVDMLLCRYCRYVVMSILSICCYVDIVDMLLCRYCRYVVMSILSICCYVDIVD 87
Query: 121 SMYLSVCRFTVF*CTSLSILIEI 53
+ CR+ V S+ ++I
Sbjct: 88 MLLCRYCRYAVISILSICCYVDI 110
Score = 29.1 bits (62), Expect = 1.6
Identities = 26/95 (27%), Positives = 39/95 (41%)
Frame = -1
Query: 369 LSVCRYTTRIS*CMQLTLYLSVSRYTVS*CM*LHCILMLVATIYLSTCSYIVS*RKSLHC 190
LS+C Y + M L Y RY V + + C + +V + C Y+V S+ C
Sbjct: 27 LSICCYVDIVD--MLLCRYC---RYVVMSILSICCYVDIVDMLLCRYCRYVVMSILSICC 81
Query: 189 ILVYVATLYLSVCSYTVS*RKSLQCILVYVASLYF 85
+ V L C Y V S+ C + V L +
Sbjct: 82 YVDIVDMLLCRYCRYAVISILSICCYVDIVDMLLY 116
Score = 27.1 bits (57), Expect = 6.4
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = -1
Query: 333 CMQLTLYLSV-----SRYTVS*CM*LHCILMLVATIYLSTCSYIVS*RKSLHCILVYVAT 169
C+ +Y+ + RY V + + C + +V + C Y+V S+ C + V
Sbjct: 4 CLHAVIYVDMLLCRYCRYAVMSILSICCYVDIVDMLLCRYCRYVVMSILSICCYVDIVDM 63
Query: 168 LYLSVCSYTVS*RKSLQCILVYVASL 91
L C Y V S+ C + V L
Sbjct: 64 LLCRYCRYVVMSILSICCYVDIVDML 89
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.9 bits (64), Expect = 0.91
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Frame = -1
Query: 399 CILAQVAKLYLSVCRYTTRIS*CMQLTLYLSVSRYTVS*CM*LH---------CILMLVA 247
C + + +S+C + R+ +++T+Y +V YTV C +H C+ +++
Sbjct: 318 CACRYIHSVCVSLCAQSVRV---VKITVY-AVVMYTVYACRYVHSVCVSLCAQCMRVVMC 373
Query: 246 TIYLSTCSYIVS*RKSL--HCILVYVATLYLSVCSYTVS*RKSLQCILVYVASL 91
T+Y C Y+ S SL C+ V + T+ ++V QC+ V + ++
Sbjct: 374 TVY--ACRYVHSVCVSLCAQCVRVVMCTVCACRLGHSVCVSLCAQCVRVVMCTV 425
Score = 27.5 bits (58), Expect = 4.8
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Frame = -1
Query: 360 CRYTTRI-----S*CMQLTLY-LSVSRYTVS*CM*LH--CILMLVATIYLSTCSYIVS*R 205
CRY + S C+++ + + RY S C+ L C+ +++ T+ +S C+ +
Sbjct: 229 CRYVHSVCVSFRSQCVRVVMCTVCACRYVHSVCVSLRSQCVRVIMYTVCVSLCAQCMRVV 288
Query: 204 KSLHCILVYVATLYLSVCSYTVS*RKSLQCILVYVASLYFSV 79
C YV ++ +S+C+ + C Y+ S+ S+
Sbjct: 289 MCTVCASRYVHSVCVSLCTQCMRVVMCTVCACRYIHSVCVSL 330
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1
Query: 333 CMQLTLYLSVSRYTVS*CM*LH---CILMLVATIYLSTCSYIVS*RKSLHCILVYVATLY 163
C+ +T LS+ +++ C L C L+ V L + Y +S ++HC L L
Sbjct: 146 CLSVTFCLSIVCLSITVCPLLSITVCPLLSVCYCPLLSVRYCLS--VTVHCCLSVTVCLL 203
Query: 162 LSVC 151
LSVC
Sbjct: 204 LSVC 207
>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 277 HALRYSVATYAKIKC*LHTLRYPSSVATYTKIQFSDLR*DTVILHA 414
+ L YS T HT YPS +A Y+ L +ILHA
Sbjct: 58 YTLNYSYCTLLTPHA-AHTTHYPSHIARYSHYTLCTLHTTLLILHA 102
>SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 27.9 bits (59), Expect = 3.7
Identities = 23/97 (23%), Positives = 40/97 (41%)
Frame = +1
Query: 112 DTLKRLTLRYSVTAYTKI*CSHIH*DTVKRLTLRYNVTACTKIYCSDKH*DTV*LHALRY 291
DT+ T R++ T + DT+ T R+N T K DT+ R+
Sbjct: 26 DTITPETSRHNYTRNVTTQLNPKRHDTITPDTSRHNYTRNVTTQLHPKRHDTITPETSRH 85
Query: 292 SVATYAKIKC*LHTLRYPSSVATYTKIQFSDLR*DTV 402
+ Y K + LH +R + ++ ++ R DT+
Sbjct: 86 NYTRYVKTQ--LHPIRQETITPETSRHNYTPKRHDTI 120
>SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81)
Length = 316
Score = 27.5 bits (58), Expect = 4.8
Identities = 24/82 (29%), Positives = 33/82 (40%)
Frame = -1
Query: 360 CRYTTRIS*CMQLTLYLSVSRYTVS*CM*LHCILMLVATIYLSTCSYIVS*RKSLHCILV 181
C + R+ C T+Y VSRY VS + C + L + +C + R
Sbjct: 27 CTVSCRVILCRVPTVYRVVSRYIVSCTYGVPCRVALYRVVSCISCRVRTAYRVVFSS--W 84
Query: 180 YVATLYLSVCSYTVS*RKSLQC 115
V TLY V Y VS + C
Sbjct: 85 RVRTLYRVVSRYIVSCPYGVPC 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,787,050
Number of Sequences: 59808
Number of extensions: 196848
Number of successful extensions: 262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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