Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I03
         (423 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044929-1|AAH44929.1|  364|Homo sapiens popeye domain containin...    29   6.5  
BC026911-1|AAH26911.1|  178|Homo sapiens POPDC2 protein protein.       29   6.5  
AF204173-1|AAG23406.1|  366|Homo sapiens popeye protein 2 protein.     29   6.5  

>BC044929-1|AAH44929.1|  364|Homo sapiens popeye domain containing 2
           protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 234 STCSYIVS*RKSLHCILV---YVATLYLSVCSYTVS 136
           ++CSYI   RKSLH +L    Y++ L+ ++  Y +S
Sbjct: 207 TSCSYISWPRKSLHLLLTKERYISCLFSALLGYDIS 242


>BC026911-1|AAH26911.1|  178|Homo sapiens POPDC2 protein protein.
          Length = 178

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 234 STCSYIVS*RKSLHCILV---YVATLYLSVCSYTVS 136
           ++CSYI   RKSLH +L    Y++ L+ ++  Y +S
Sbjct: 25  TSCSYISWPRKSLHLLLTKERYISCLFSALLGYDIS 60


>AF204173-1|AAG23406.1|  366|Homo sapiens popeye protein 2 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 234 STCSYIVS*RKSLHCILV---YVATLYLSVCSYTVS 136
           ++CSYI   RKSLH +L    Y++ L+ ++  Y +S
Sbjct: 207 TSCSYISWPRKSLHLLLTKERYISCLFSALLGYDIS 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,929,955
Number of Sequences: 237096
Number of extensions: 770927
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)