Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I01
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.65
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.6
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 26 3.5
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 4.6
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.1
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 6.1
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 8.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.1
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.65
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 463 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 570
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 500 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACL 357
V+R + SGS+ G S SA A S SLA + P+ A C+
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCV 170
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 112 RGLLGDGNNEPYDDFRLPNGKI-CTSESEF 198
RG+L D +N DDF L N +I SE EF
Sbjct: 38 RGILYDSDNRVVDDFFLNNKRIVLDSEIEF 67
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 3.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +2
Query: 143 HTMTSDYLTERSAHLRVNLATHIA--WRAA--VLKSRL---PSTPTTRCTLLCHQPVNR 298
H M+ D LT+ + NL T IA W + K L P+ PTT+C L C + + R
Sbjct: 45 HLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNCMRLLTR 103
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 127 DGNNEPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQT 243
DGN Y FR PN + T+ A L+R C K++T
Sbjct: 36 DGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKT 74
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 512 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 387
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 6.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 552 WHFELINVSDGVRLVRVGAAHASVRQ 475
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 479 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 375
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 509 SASVQRTQASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 390
SAS +SGS++GSS +SA+ + L+R + LA S
Sbjct: 465 SASGSSAHSSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 52 CTSKLEVCYFEVNGFYLG 105
C+S E CYF+ + FY G
Sbjct: 4062 CSSWKEPCYFDDSDFYFG 4079
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,414
Number of Sequences: 5004
Number of extensions: 46696
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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