Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I01
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0312 + 2764744-2767390,2767632-2767990 33 0.22
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 32 0.38
11_02_0037 - 7613632-7613727,7614452-7615507 30 1.5
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 29 2.7
08_02_1557 + 27867977-27869134 29 2.7
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 29 2.7
08_01_0303 + 2493388-2493954 28 6.2
01_06_0240 + 27794741-27795466 28 6.2
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 6.2
12_01_0725 + 6428572-6428817 27 8.2
11_05_0096 - 19029632-19029937,19030376-19031197 27 8.2
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 27 8.2
03_05_0128 - 21076504-21076974,21077075-21077311,21077558-210776... 27 8.2
02_04_0510 + 23558111-23559613 27 8.2
01_06_0579 + 30379243-30379617 27 8.2
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 32.7 bits (71), Expect = 0.22
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 482 SGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGV-ISNNRLIGRSGEIP 306
S S +G+ P A L Q W SLA +P++ L + +S N L SG IP
Sbjct: 330 SNSLSGTIPAAIGALPSLEVLQLWNNSLAGRLPESLGASRRLVRLDVSTNSL---SGPIP 386
Query: 305 PNTCSQAGGRAA 270
P C AG R A
Sbjct: 387 PGVC--AGNRLA 396
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 31.9 bits (69), Expect = 0.38
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = -3
Query: 512 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCK------SLAASVPDT-AWMHACLN 354
L+A+ T A+ G+ + YP+ S AWC A + DT A MHA N
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWCTPDMAPGRCRACLADTIAQMHAYFN 224
Query: 353 GVISNNRLIG 324
RL+G
Sbjct: 225 PNAQGARLVG 234
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 142 PYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTPE-HSHHQMHAALPP 285
P+ + G + +G AY+ AR+ P P H HH H + P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 303 RRNLPTSANQSIIRYHTIQTSVHPRGVRNR 392
+ NL + +S++RYH + TS G+R R
Sbjct: 196 KSNLNCTIKESLVRYHDVVTSAKKHGIRIR 225
>08_02_1557 + 27867977-27869134
Length = 385
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 455 VRASAAYPLARSQAWCKSLAASVP 384
V AS+AYP Q+ CKS AAS P
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSP 241
>07_03_1251 +
25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 470 AGSSPVRASAAYPLARSQA--WCKSLAASVPDTAWMHACLNGVISN 339
A SP A+AA P R++A +C P ++ +H CL G+ S+
Sbjct: 11 ASDSPA-AAAASPAVRAEALAYCARARDETPPSSLLHLCLYGLASS 55
>08_01_0303 + 2493388-2493954
Length = 188
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 367 CIHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRC 498
C HA+S AA +LH+ C R + L T L A VRC
Sbjct: 15 CHHAISRRSAAVELHR-CSRRRRPSPLTTTVALTRRRSPAAVRC 57
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 463 LPAVLPDACVRCTDADKPHAIGDV 534
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 485 ASGSTAGSSPVRASAAY-PLARSQAWCKSLAASVPDTAWMHACLNG 351
+S +T+ SPVRAS+ Y + + A K + S +W+H G
Sbjct: 723 SSANTSSDSPVRASSEYHEVPPTDAEDKEIDESNQGESWVHGLAEG 768
>12_01_0725 + 6428572-6428817
Length = 81
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 519 VRLVRVGAAHA--SVRQHSRQQSREGQRRVSSRQVTGLVQVLSGVCSGHRVDARLSEWC 349
+ ++ GAA +V H+ RR + + +V+ SG CSGHR +A ++ WC
Sbjct: 16 ITMIACGAARKKDAVYVHAVTTPPSQNRRALQVRPSPVVEP-SGCCSGHRSEA-VASWC 72
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 400 KDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 531
+ L D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 340 LDITPFRQACIHAVSGTDAAKDL 408
LDIT RQ +H VSGTD KD+
Sbjct: 168 LDIT--RQFLLHIVSGTDVEKDV 188
>03_05_0128 -
21076504-21076974,21077075-21077311,21077558-21077682,
21082636-21082885
Length = 360
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 470 AGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRLIG-RSGEIPPNTC 294
AG++ + A++ + A SLAA+VP + L V +NN L+ + P N
Sbjct: 3 AGNNAIAAASFAIVVLVAAAASSLAAAVPAVYVLGDSLADVGNNNHLLTLLKADFPHNGI 62
Query: 293 SQAGGRA 273
GG+A
Sbjct: 63 DYPGGKA 69
>02_04_0510 + 23558111-23559613
Length = 500
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 136 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 32
CY+ R+D + + + +S KP + Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404
>01_06_0579 + 30379243-30379617
Length = 124
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 263 RCTLLCHQPVNRCSEESPH 319
RCT+ CH P+ R S SPH
Sbjct: 10 RCTISCHSPMRRSS--SPH 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,556
Number of Sequences: 37544
Number of extensions: 369884
Number of successful extensions: 1224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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