Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I01
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   49   2e-06
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.042
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   0.52 
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     31   0.52 
SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)                       29   3.7  
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                29   3.7  
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)                  28   6.4  
SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_7095| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)                 27   8.5  
SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)                   27   8.5  

>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 5/159 (3%)
 Frame = +1

Query: 115  GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSLAR--SCPKVQTPEHSHHQMHAALPPA 288
            GLLG  NNE +D+   PNGK   S  EF N++ +     C   +  +       +     
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEVTNDTKCQIQRYIKPKSKCPTSRYSSR 1870

Query: 289  CEQVF-GGISPLRPISLLLDITPFRQAC--IHAVSGTDAAKDLHQACDLARGYAALALTG 459
            C ++F    SPL P   + +  PF  AC   +A   +  AKD+      A     L + G
Sbjct: 1871 CRELFKDEHSPLAPFFNITNPRPFMLACEDDYATCDSKTAKDMKHCNTTAAYIELLRMKG 1930

Query: 460  LLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIVV 576
                 LP+ C RC      H +G+ +  K  +K  D+V+
Sbjct: 1931 EWAEFLPE-CGRCAS----HEMGNTWFQK-GSKLVDVVL 1963


>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 88  NGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 216
           N F   +LRGL GD N E YD+F+ P G+   +  +F  A+ L
Sbjct: 18  NPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 88   NGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 216
            N F   +LRGL GD N E YD+F+ P G+   +  +F  A+ L
Sbjct: 1428 NPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 97  YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 216
           Y G   GL G+ N  P DDF + NG+   S+ EFG ++SL
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 115 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 216
           GLLG  NNE +D+   PNGK   S  EF N++ +
Sbjct: 63  GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96


>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1184

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 479 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNN 336
           GS   S  +  S   PLA  + +CK   A VP+T W+    +G I  N
Sbjct: 449 GSGKTSLLLTISGELPLASGELYCKGRVAYVPETPWL---FSGTIKEN 493


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 64  LEVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 207
           L V +     FY G   GL GD +N P +DF  P G+  T   +F  +
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233


>SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)
          Length = 569

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 303 RRNLPTSANQSIIRYHTIQTSVHPRGVRNRRR 398
           RRNLPT  N S I    + T    R  R RRR
Sbjct: 197 RRNLPTHDNTSTITPEAVATQAPQRRRRRRRR 228


>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 230 LKSRLPSTPTTRCTLLCHQPVNRCSEESPHFGQSVY 337
           LK     +PT +C   C    N    +  HFGQS Y
Sbjct: 199 LKPCKGDSPTPKCERKCEAGYNVSYSDDKHFGQSAY 234


>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
          Length = 407

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 242 VWTLGQLRARLYALPNSLSDVQI 174
           VW LGQ+   L+    S+SDVQ+
Sbjct: 74  VWALGQVAGSLWMATTSVSDVQV 96


>SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 233 KSRLPSTPTTRCTLLCHQPVNRCSEESPHF 322
           +SRL   P+    LL H P+N CS    +F
Sbjct: 441 QSRLFDRPSPEALLLSHGPLNACSRAVKYF 470


>SB_7095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 458 PVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRL 330
           P  +SA +PLA +Q    ++ + VP  + +H  +NG    N +
Sbjct: 31  PWASSAGWPLAINQDNSSNINSLVPSISVLHISVNGEFHENNV 73


>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
          Length = 1338

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 281 HQPVNRCSEESPHFGQSVYY*ISHHSDKRASTRCPEQTPL 400
           H+P++     S  F     +  +  ++K  S  CPEQTP+
Sbjct: 684 HKPISPHGLSSKDFSLIFDFGENSRAEKTVSINCPEQTPI 723


>SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)
          Length = 421

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 82  EVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICT 183
           EVN F L K  G   DG + P     LP G + T
Sbjct: 384 EVNAFELAKFLGNRSDGMSNPTYSLPLPGGLVDT 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,920,991
Number of Sequences: 59808
Number of extensions: 399894
Number of successful extensions: 1147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)