Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I01
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51960.1 68414.m05857 calmodulin-binding family protein conta...    30   0.98 
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    28   5.2  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    28   5.2  
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    27   6.9  
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    27   9.1  
At1g79220.1 68414.m09236 mitochondrial transcription termination...    27   9.1  

>At1g51960.1 68414.m05857 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 351

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 489 ASVRQHSRQQSREGQRRVSSRQVTGLVQVLSGVCSGHRVDARLSEWCD 346
           A VR HS  + R  ++R+S  +V      +SGV   H+   R S  CD
Sbjct: 302 AKVRSHSAPRQRSERQRLSLDEVMASKSSVSGVSMSHQHPPRHSCSCD 349


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 EPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTP 246
           EPY    LPNG++   +SE  N Y ++ S      P
Sbjct: 84  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 EPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTP 246
           EPY    LPNG++   +SE  N Y ++ S      P
Sbjct: 22  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57


>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 509 SASVQRTQASG-STAGSSPVRASAAYPLAR 423
           S S QR  A G ST G SPV+A    P+AR
Sbjct: 588 SHSAQRATARGDSTQGFSPVQAYQTSPMAR 617


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 166 NGKICTSESEFGNAYSLARSCPKVQTPEHSHHQMHAALPPACEQV 300
           +GK C    + G+  +LA   P +Q       Q H+   P C +V
Sbjct: 410 DGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRV 454


>At1g79220.1 68414.m09236 mitochondrial transcription termination
           factor family protein / mTERF family protein weak
           similarity to mtDBP protein [Paracentrotus lividus]
           GI:4584695; contains Pfam profile PF02536: mTERF
          Length = 399

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 218 RAAVLKSRLPSTPTTRCTLLCHQPVNRCSEES 313
           R A  ++ + +T TTRC+ LC      C E+S
Sbjct: 24  RKAGCRNLISATFTTRCSTLCLNESEECIEDS 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,547
Number of Sequences: 28952
Number of extensions: 267087
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)