BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_I01 (583 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g51960.1 68414.m05857 calmodulin-binding family protein conta... 30 0.98 At1g70280.2 68414.m08086 NHL repeat-containing protein contains ... 28 5.2 At1g70280.1 68414.m08085 NHL repeat-containing protein contains ... 28 5.2 At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 27 6.9 At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 27 9.1 At1g79220.1 68414.m09236 mitochondrial transcription termination... 27 9.1 >At1g51960.1 68414.m05857 calmodulin-binding family protein contains IQ calmodulin-binding motif, Pfam:PF00612 Length = 351 Score = 30.3 bits (65), Expect = 0.98 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -2 Query: 489 ASVRQHSRQQSREGQRRVSSRQVTGLVQVLSGVCSGHRVDARLSEWCD 346 A VR HS + R ++R+S +V +SGV H+ R S CD Sbjct: 302 AKVRSHSAPRQRSERQRLSLDEVMASKSSVSGVSMSHQHPPRHSCSCD 349 >At1g70280.2 68414.m08086 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat Length = 509 Score = 27.9 bits (59), Expect = 5.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 139 EPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTP 246 EPY LPNG++ +SE N Y ++ S P Sbjct: 84 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119 >At1g70280.1 68414.m08085 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat Length = 447 Score = 27.9 bits (59), Expect = 5.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 139 EPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTP 246 EPY LPNG++ +SE N Y ++ S P Sbjct: 22 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57 >At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) family protein low similarity to SP|P79263 Inter-alpha-trypsin inhibitor heavy chain H4 precursor {Sus scrofa}; contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain Length = 641 Score = 27.5 bits (58), Expect = 6.9 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -3 Query: 509 SASVQRTQASG-STAGSSPVRASAAYPLAR 423 S S QR A G ST G SPV+A P+AR Sbjct: 588 SHSAQRATARGDSTQGFSPVQAYQTSPMAR 617 >At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 781 Score = 27.1 bits (57), Expect = 9.1 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = +1 Query: 166 NGKICTSESEFGNAYSLARSCPKVQTPEHSHHQMHAALPPACEQV 300 +GK C + G+ +LA P +Q Q H+ P C +V Sbjct: 410 DGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRV 454 >At1g79220.1 68414.m09236 mitochondrial transcription termination factor family protein / mTERF family protein weak similarity to mtDBP protein [Paracentrotus lividus] GI:4584695; contains Pfam profile PF02536: mTERF Length = 399 Score = 27.1 bits (57), Expect = 9.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 218 RAAVLKSRLPSTPTTRCTLLCHQPVNRCSEES 313 R A ++ + +T TTRC+ LC C E+S Sbjct: 24 RKAGCRNLISATFTTRCSTLCLNESEECIEDS 55 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,718,547 Number of Sequences: 28952 Number of extensions: 267087 Number of successful extensions: 796 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 783 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 796 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1141585696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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