Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H24
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   1.4  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.9  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    27   1.9  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   2.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   5.8  
SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    25   5.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   5.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   7.6  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   RNSARGEVPIHQNMAPIPISIP 69
           RN+ RG+VP+  N  P+ + +P
Sbjct: 500 RNTTRGDVPVDHNTPPLVVYMP 521


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 132 VAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNS 263
           V+P E+   + +S       QT    S+T S PV++ S  + +S
Sbjct: 246 VSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSS 289


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -3

Query: 219 QYKTAGSTSELRKDQHRSAPVIFLPLQELL------DTYMVRVERAAKIPG 85
           Q +  G   EL+ DQ++  P++   +QE L       ++M +V+R   +PG
Sbjct: 318 QKRVVGENLELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPG 368


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 36  PKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAP-EEAEKLQEQSGAGPYVA 191
           P +    +Q S  S  +PV L   +  P + PV+P  +  KL+  S   P  A
Sbjct: 243 PSFEELNFQISQPSPAHPVDLSSPETAPNISPVSPFAQLVKLEPTSPQKPSFA 295


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 30  DPP-KYGSYTYQYSCRSEPYPVSLQH-VQLVPCMCPVAPEEAEK 155
           DP  +Y +  + +SC +  +P SL H V+ +P   P+  EE +K
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSHCVKRLP--TPIPAEELQK 604


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 32  STKIWLLYLSVFLPERALPGIFAARSTRTMYVSSSS 139
           S  +W  YLS  LP+RA  GI +     +  +  S+
Sbjct: 330 SDSMWATYLSQCLPKRAALGILSLTIVSSFLMGQSN 365


>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 75  SEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGP 182
           SEP P++ +      C CP   +  +    QS  GP
Sbjct: 14  SEPAPIASEEKPKPCCACPETKQARDACMLQSSNGP 49


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 463 FNLPLCVIIKFLYMF*NKPTYYIYIL 540
           FN+P  +I  F Y+  + P YY Y L
Sbjct: 490 FNIPFLLICIFFYIQSSPPFYYGYAL 515


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 534  VNIICWFILEHVQKFNNYT 478
            V II WF  EHV+  ++Y+
Sbjct: 1128 VEIIHWFFSEHVETLHDYS 1146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,579
Number of Sequences: 5004
Number of extensions: 42846
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)