Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H24
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.63 
10_08_0565 + 18827298-18827361,18827473-18827784,18827886-188287...    29   1.9  
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523...    29   3.4  
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058...    28   4.4  
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746...    28   4.4  
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485     28   4.4  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 201 STSELRKDQHRSAPVIFLPLQELLDTYMVRVERAAKIPGKARSGRNTDRY 52
           ST E RK  H+ +P   L  +    TY++ ++R+  +PG         R+
Sbjct: 174 STKESRKGLHKDSPRPLLISKSTDGTYVIGIDRSTGVPGYVHESSRPPRF 223


>10_08_0565 +
           18827298-18827361,18827473-18827784,18827886-18828758,
           18828870-18828946,18829090-18829119,18829654-18829731
          Length = 477

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 152 FCLFR-SYWTHTWYELNVLQRYRVR 81
           FC++  +Y  H ++E+ V QRYRVR
Sbjct: 449 FCVYEVAYKCHEYFEVRVRQRYRVR 473


>02_05_1168 +
           34651143-34651424,34651983-34652138,34652239-34652346,
           34652778-34652888,34652985-34654421,34654598-34654852
          Length = 782

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 132 VAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNSNK 269
           V  E  E+  + SG    V +   + SY + QP+A   DP+  +N+
Sbjct: 477 VFEEGDEEEDKDSGVEEEVCKEVVEESYVMQQPLAEPEDPATRNNR 522


>06_03_0712 +
           23803597-23803945,23804118-23805479,23805743-23805811,
           23806050-23806330,23806817-23807076,23807521-23807689,
           23807796-23808068,23808251-23808499
          Length = 1003

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 165 QSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNSNKQ*IIKCLFSSFRS 308
           +SGA   +A+ ++  S  +SQ + VA     NSNK+ I+  L +   S
Sbjct: 443 ESGAKQGMAEGFAHFSEILSQKIKVAEADDANSNKEKILSSLHAQKES 490


>02_03_0121 +
           15468894-15468906,15469008-15469193,15474157-15474650,
           15475090-15475521,15475597-15475821,15476065-15476346,
           15476432-15476704,15477680-15477805,15481010-15481288,
           15481313-15481588,15481670-15482113,15482200-15482397,
           15482574-15482732,15482832-15483085,15483164-15483316,
           15483395-15483683,15483769-15483807,15483913-15483951
          Length = 1386

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
 Frame = +3

Query: 126 CPVAPEEAEKLQEQSGAGPYVA---QTYSQPSYTVSQPVAVASDPS 254
           CP A  + E + + SG   +V+   +T +Q S+++++P AVA++P+
Sbjct: 48  CPCADCKNENIFD-SGEDVHVSCLLRTLAQSSFSIAEPAAVATEPA 92


>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
          Length = 283

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 30  DPPKYG-SYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAG 179
           DPP Y  +YTY+++C + P P      +  P   P A  +A  L+  S AG
Sbjct: 116 DPPLYRVTYTYEHTCNTTPVPTPDVVAEQPP---PGAAGDAYLLRFGSSAG 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,504
Number of Sequences: 37544
Number of extensions: 254245
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)