Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H24
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39109| Best HMM Match : PT (HMM E-Value=5)                          30   1.1  
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.6  
SB_31941| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)              27   7.9  

>SB_39109| Best HMM Match : PT (HMM E-Value=5)
          Length = 231

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 186 VAQTYSQPS--YTVSQPVAVASDPSKNSNKQ*IIKCLFSSFRSYF*NP 323
           V Q  S PS  Y+ S  + VAS PS+  +K  +++   +S R YF +P
Sbjct: 6   VLQVASTPSRQYSKSPVLQVASTPSRQYSKSPVLQVASNSSRQYFKSP 53


>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 21  RSSDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQS 170
           R   PP   +    +   SE YP+     +++P +CP+  +  +K+++Q+
Sbjct: 316 RDPFPPARTAGVMAFCVTSEFYPLKDVAARILPALCPLTVDPEKKVRDQT 365


>SB_31941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 246 PMRLLLAVIQYKTAGSTSELRKDQHRS 166
           P   LLAV ++K+AGST +LR+   +S
Sbjct: 15  PRLKLLAVARHKSAGSTEDLREISPKS 41


>SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)
          Length = 281

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 221 YSIRRLGVRLSYVRTSTALLL*FFCLFRSYWTHTWYELNV---LQRY 90
           +S   + +  +++   TA+L+   CL   YW   W+E N    LQR+
Sbjct: 116 FSANMIKIITTFMNALTAMLMGCLCLATDYW-KVWWEQNTAANLQRF 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,044,705
Number of Sequences: 59808
Number of extensions: 308328
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)