Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H24
         (560 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula oc...    30   4.8  
DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein ...    30   4.8  
BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein ...    30   4.8  

>L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula
            occludens) protein ZO-1 protein.
          Length = 1736

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 27   SDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSG 173
            + PP++ S    +S  +E     + ++  VP   PV+P   E+ +++ G
Sbjct: 1569 AQPPEFDSGVETFSIHAEKPKYQINNISTVPKAIPVSPSAVEEDEDEDG 1617


>DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein 1
            (zona occludens 1) protein.
          Length = 1748

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 27   SDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSG 173
            + PP++ S    +S  +E     + ++  VP   PV+P   E+ +++ G
Sbjct: 1581 AQPPEFDSGVETFSIHAEKPKYQINNISTVPKAIPVSPSAVEEDEDEDG 1629


>BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein 1
            (zona occludens 1) protein.
          Length = 1748

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 27   SDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSG 173
            + PP++ S    +S  +E     + ++  VP   PV+P   E+ +++ G
Sbjct: 1581 AQPPEFDSGVETFSIHAEKPKYQINNISTVPKAIPVSPSAVEEDEDEDG 1629


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,789,391
Number of Sequences: 237096
Number of extensions: 1444443
Number of successful extensions: 3118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3118
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)