Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H24
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    31   0.75 
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    30   0.99 
AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
 Frame = +3

Query: 12  GTRRSSDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAE--KLQEQSGAGPY 185
           G+  +S PP   S +      S    VS+Q  Q+     PVA   ++    Q+ SG+   
Sbjct: 648 GSTMTSAPPVTSSSSANTGSTSSGTTVSVQTTQVSSTTSPVASSSSQMTSTQQPSGSSSS 707

Query: 186 VAQTYSQ--PSYTVSQPVAVASDPSKNSN 266
           +  T +Q   S T   P +  S  S+ S+
Sbjct: 708 IGSTVNQGSSSVTTQPPASSRSTASQGSS 736


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +3

Query: 6   EFGTRRSSDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPY 185
           E+G ++S +   Y S+++QY    EP P    H  +   +      +  K+ ++S     
Sbjct: 421 EYGGQQSDNSMDYDSFSHQYDPSYEPLPFKPLHTDIPKKLTDDEEFKYMKIGKRSVTPER 480

Query: 186 VAQTYSQPSYTV-SQPVAVASDPSKN 260
           ++  Y   +Y    Q   V  DP K+
Sbjct: 481 ISGRYGSMTYPFWIQQGGVGIDPPKD 506


>AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical
           protein B0511.13 protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 384 LLSYWGDYFIYFISFYRCLW-LNYSRGFQSA 473
           +L  + +YFI+FI+F  C W   Y R  +S+
Sbjct: 16  ILVVYNEYFIFFIAFSSCQWPCKYGRCSESS 46


>Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical
           protein F57F5.1 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
 Frame = +3

Query: 45  GSYTYQYSCRSEPYPVSLQHV---QLVPCMCPVAPEEAEKLQEQSGAGPYVAQT--YSQP 209
           GSY  +  C+  PYP    HV      PC   + P +  +   Q+G      Q   + Q 
Sbjct: 237 GSYQDKTGCKPYPYPPCEHHVNGTHYKPCPSNMYPTDKCERSCQAGYALTYQQDLHFGQS 296

Query: 210 SYTVSQPVA 236
           +Y VS+  A
Sbjct: 297 AYAVSKKAA 305


>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 52  IPISIPAGASLTRYLCSTFNSYHVCVQ*L-LKRQKNYRS 165
           IP+   +G   T+Y C  F S+H  +Q L   R + +R+
Sbjct: 320 IPVHARSGYIFTKYTCYLFISFHSLLQPLCFMRMREFRN 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,123,931
Number of Sequences: 27780
Number of extensions: 236156
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)