Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H24
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61110.1 68418.m07667 hypothetical protein                          31   0.70 
At1g15240.1 68414.m01824 phox (PX) domain-containing protein wea...    29   2.8  
At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    28   4.9  
At5g56460.1 68418.m07047 protein kinase, putative contains prote...    27   6.5  
At3g54580.1 68416.m06039 proline-rich extensin-like family prote...    27   6.5  
At3g13222.1 68416.m01655 expressed protein                             27   8.6  

>At5g61110.1 68418.m07667 hypothetical protein 
          Length = 113

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 141 EEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNSNKQ 272
           E   +    S +G  ++ T+ QP    + PVAV  D S + N+Q
Sbjct: 61  EVVNQTMTSSDSGNQISATHQQPPQAHASPVAVPMDTSSSDNQQ 104


>At1g15240.1 68414.m01824 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 706

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 135 APEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNSNKQ 272
           A EEA + ++ S   P     Y  PS T  + V + ++  KNS K+
Sbjct: 297 AAEEASQSEDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKK 342


>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = +3

Query: 15  TRRSSDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQ 194
           T  S  PP Y S T +   +S P P    +V   P   P++   + K+  +S   PYV  
Sbjct: 10  TYSSPPPPLYDSPTPKVDYKSPPPP----YVYSSPPP-PLSYSPSPKVDYKSPPPPYVYS 64

Query: 195 TYSQPSYTVSQPVAVASDP 251
           +   P Y+ S  V   S P
Sbjct: 65  SPPPPYYSPSPKVEYKSPP 83


>At5g56460.1 68418.m07047 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 408

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 99  QHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQ 206
           +H++ V  + P  P+E E L+  S A P +A TY +
Sbjct: 34  KHIKEVQKL-PSNPKEVEDLRRDSAANPLIAFTYEE 68


>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 951

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 24  SSDPPKYGSYTYQYSCRSEPYPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYS 203
           SS PP Y S + +   +S P P    +V   P     +P  + K++ +S   PYV  +  
Sbjct: 303 SSPPPPYYSPSPKVDYKSPPPP----YVYSSPPPPTYSP--SPKVEYKSPPPPYVYSSPP 356

Query: 204 QPSYTVSQPVAVASDP 251
            P+Y+ S  V   S P
Sbjct: 357 PPTYSPSPKVEYKSPP 372


>At3g13222.1 68416.m01655 expressed protein
          Length = 567

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 7   NSARGEVPIHQNMAPIPISIPAGAS 81
           N+AR +      MAP PIS+P+G S
Sbjct: 127 NNARNDTKPSSIMAPNPISLPSGIS 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,302
Number of Sequences: 28952
Number of extensions: 210714
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)