Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H23
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0086 + 15916555-15916905,15917236-15917262                       31   0.47 
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    29   1.4  
11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    29   2.5  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    28   3.3  
02_05_1004 + 33444248-33444847                                         27   5.8  
02_05_0263 - 27257150-27259213                                         27   5.8  
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506...    27   7.7  

>01_04_0086 + 15916555-15916905,15917236-15917262
          Length = 125

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 304 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYA 426
           S R   GENL+W S           +A++SW  E  DY YA
Sbjct: 72  SNRNNLGENLFWGSAGGDW---TAASAVQSWVGEKSDYDYA 109


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 74  VLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 202
           + + S  ++  T HA KS  + T   IG+N+W  V  QD  ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398


>11_04_0438 -
           17737040-17737122,17737373-17737496,17737897-17738182,
           17738265-17738397,17738742-17738953,17739455-17739816,
           17739907-17739937,17744738-17745111
          Length = 534

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 319 TGENLYWYSTTDSTYKLNVDNAME-SWFNEYKDYKYAPLKQSDFDKSK 459
           T +  Y +  TD   K+ V+  M   + N+  D +  PLK  +FD+SK
Sbjct: 238 TNDKSYTFGFTDQGCKIFVEMFMAVKYVNDLYDDEQIPLKALNFDESK 285


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 274 NFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
           N  NPDK++G  +    E  +   T DS    +++ AME+W
Sbjct: 406 NASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAW 446


>02_05_1004 + 33444248-33444847
          Length = 199

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = +1

Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
           + W   L         Q +       +   G+F  GEN++W     +       +A++ W
Sbjct: 79  LAWSPRLESYARWWAAQRRGDCALRHSFPEGQFALGENIFWGGAGGA---WRPGDAVKDW 135

Query: 397 FNEYKDYKYA 426
             E  DY YA
Sbjct: 136 AAEGVDYSYA 145


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 71  YVLDTSIVNLY*TCHANKSKISS 139
           Y+L+T IVNLY  C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190


>02_03_0141 - 15649188-15649274,15649376-15649421,15650476-15650606,
            15652168-15652254,15652470-15652538,15652699-15652845,
            15652923-15653003,15653122-15653223,15653392-15653429,
            15653590-15653692,15653766-15653888,15654872-15654951,
            15655356-15655504,15657794-15658010,15658379-15658448,
            15659167-15659313,15659430-15659486,15663270-15663436,
            15663479-15663569,15664044-15665081,15665580-15665695,
            15666104-15667039,15667108-15667170,15667416-15667970,
            15668293-15668305
          Length = 1570

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 289  DKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAP 429
            D   G G +   EN   Y T D++  L++ + +  WF+EY ++   P
Sbjct: 1241 DSPAGVG-YSYSENEDDYVTNDTSRVLDLYDFLSKWFSEYLEFLSNP 1286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,323
Number of Sequences: 37544
Number of extensions: 243240
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)