Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H23
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)          30   1.1  
SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   2.0  
SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1)                     29   2.6  
SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   3.4  
SB_47116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)                     27   7.9  

>SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 423
           GENLY   TT  T     D A++SW++E  +Y Y
Sbjct: 126 GENLYNKGTTSGTVSTCQD-AVDSWYSEIDNYDY 158


>SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)
          Length = 1171

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 WDREDSRLVKICIGIQRPIAHTN*MWTTLWRVG 397
           WD  +  +V+ C G  RPI     +W+ L++ G
Sbjct: 115 WDYMEDNIVRFCEGTIRPILSEEGVWSPLYKSG 147


>SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 185 DT*PLASNCLL*LCPL-TKSLICLHDKFSRDLLWTCP 78
           D  P  +  +L +CP  T+ ++ +  +F+RD+L TCP
Sbjct: 82  DLCPRGTRDMLEMCPRGTRDMLVMCPRFNRDMLETCP 118


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 361  YKLNVDNAMESWFNEYKDYKYAPL 432
            Y L  D A E W++E KDY +  L
Sbjct: 3699 YDLRGDKAAEMWYDEVKDYNFETL 3722


>SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1)
          Length = 112

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +2

Query: 404 NIKITNMLP*NRVTSTSLN 460
           N+K+TN++P +RVTS ++N
Sbjct: 46  NVKLTNIMPSSRVTSVTIN 64


>SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 146 CPLTKSLICLHDKFSRDLLWTCPIHTTI 63
           CP TK+  C H+K  ++  + CP    +
Sbjct: 235 CPFTKATCCTHNKCCKEGTFCCPTEPAV 262


>SB_47116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 361 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKIGH 474
           Y+ N  + ++ WF+E + Y Y   K S  +  +P  GH
Sbjct: 44  YQKNPTDGVQDWFDERQHYTYG--KHSPRNCRRPSCGH 79


>SB_21314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 373 VDNAMESWFNEYKDYKYAPLKQSDFDKSK 459
           VD++++SWF++Y D+       ++F+  K
Sbjct: 288 VDSSVKSWFDDYMDWAKVSKPAANFNAGK 316


>SB_887| Best HMM Match : SCP (HMM E-Value=7.1e-25)
          Length = 147

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 322 GENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 423
           GENLY  S ++    +N  + ++ W++E   YK+
Sbjct: 59  GENLYMCSPSE----INAGDIVDEWYSEISKYKF 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,223
Number of Sequences: 59808
Number of extensions: 283847
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)