Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H23
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei...    31   0.30 
At4g25780.1 68417.m03710 pathogenesis-related protein, putative ...    31   0.53 
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea...    29   1.2  
At1g21750.2 68414.m02723 protein disulfide isomerase, putative s...    29   2.1  
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s...    29   2.1  
At3g19690.1 68416.m02494 pathogenesis-related protein, putative ...    28   2.8  
At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit...    28   3.7  
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea...    27   6.5  
At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing pr...    27   6.5  
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea...    27   8.6  

>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 210

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +1

Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
           +VWD ++         Q +  ++   T  +G +  GENL+W S +D T       A+ESW
Sbjct: 94  LVWDVKIASYATWWANQRR--YDCSLTHSTGPY--GENLFWGSGSDFTSTF----AVESW 145

Query: 397 FNEYKDYKY 423
             E K Y +
Sbjct: 146 TVEAKSYNH 154


>At4g25780.1 68417.m03710 pathogenesis-related protein, putative
           similar to gene PR-1 protein - Medicago truncatula,
           SP|Q40374; contains Pfam profile PF00188: SCP-like
           extracellular protein
          Length = 190

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW-YSTTDSTYKLNVDNAMES 393
           ++WD  L         Q +       ++ +G F  GEN+YW Y    S       +A+ +
Sbjct: 71  LIWDRRLQNYAQGWANQRRGDCALRHSVSNGEFNLGENIYWGYGANWSP-----ADAVVA 125

Query: 394 WFNEYKDYKY 423
           W +E + Y Y
Sbjct: 126 WASEKRFYHY 135


>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to WD40-repeat containing protein Ciao 1
           (SP:O76071) [Homo sapiens]
          Length = 352

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 304 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 423
           +G  Q  + + W+ T D  +  + DN ++ W++E  D +Y
Sbjct: 160 TGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEY 199


>At1g21750.2 68414.m02723 protein disulfide isomerase, putative
           similar to SP|P29828 Protein disulfide isomerase
           precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
           contains non-consensus GA donor splice site at intron 9
          Length = 487

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 352 DSTY-KLNVD-NAMESWFNEYKDYKYAPLKQS 441
           D  Y K NV+ + +ESW  ++KD K AP K+S
Sbjct: 334 DKKYLKTNVEVDQIESWVKDFKDGKIAPHKKS 365


>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
           similar to SP|P29828 Protein disulfide isomerase
           precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
           contains non-consensus GA donor splice site at intron 9
          Length = 501

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 352 DSTY-KLNVD-NAMESWFNEYKDYKYAPLKQS 441
           D  Y K NV+ + +ESW  ++KD K AP K+S
Sbjct: 334 DKKYLKTNVEVDQIESWVKDFKDGKIAPHKKS 365


>At3g19690.1 68416.m02494 pathogenesis-related protein, putative
           similar to PR-1a protein GI:19944 GB:X06930 from
           [Nicotiana tabacum]; contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 161

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 217 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 396
           +VWD+E+         Q  N    D  L       GEN+       S+ +++ ++A E W
Sbjct: 45  LVWDDEVAAYAASYANQRIN----DCALVHSNGPFGENIAM-----SSGEMSAEDAAEMW 95

Query: 397 FNEYKDYKY 423
            NE + Y Y
Sbjct: 96  INEKQYYDY 104


>At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At11), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 152

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 55  ILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 144
           I  +++   +++ KSLL+L+C+ + D + G
Sbjct: 90  IFELILAANYLNIKSLLDLTCQTVADMIKG 119


>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
           family protein HIRA protein, Drosophila melanogaster,
           PID:e1250847
          Length = 318

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 304 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKY 423
           +G  +  + + W+ T D  +  + DN ++ W +E +D  Y
Sbjct: 136 TGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDY 175


>At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 204

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 340 YSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKPKI 468
           Y  T +  KL   N + ++ +  +DYKYA L   DF+ + PK+
Sbjct: 140 YYITPTGKKLKSRNEIAAFIDANQDYKYALL--GDFNFTVPKV 180


>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
           family protein similar to katanin p80 subunit
           [Strongylocentrotus purpuratus] GI:3005601; contains
           Pfam profile PF00400: WD domain, G-beta repeat
          Length = 871

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 VWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGEN 330
           VW  +L           ++  +P+KT GSGR Q G N
Sbjct: 386 VWVVDLSRTEPMSGGATQSNSHPEKTSGSGRDQAGLN 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,296,936
Number of Sequences: 28952
Number of extensions: 203893
Number of successful extensions: 477
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)