Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H22
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    29   0.44 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    29   0.59 
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   4.1  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   4.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   5.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.2  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   9.5  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   9.5  

>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -3

Query: 336 LLIIALYKLVYSTIKIRYPNSW*VCIRSILRDIIFTNKYTKAC-IFSTEAEEL 181
           L++ A +KL+++ +   YPN   +  R ILR  +F++  T  C  +S E +++
Sbjct: 68  LMVNAYWKLIHTVVS-NYPNRPTLDERDILRHYLFSSAITMPCGEYSVELQKI 119


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 440 NNFSVKVDKTVINFSS*KKY*TLTFFSQS 354
           +NFS  ++KTVINF +       TFF++S
Sbjct: 768 HNFSTSLEKTVINFENSNGIINNTFFNES 796


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 375 SLIFFLAGEIYHSFINFY*EIIVNFRIYNSMFQN 476
           S  FF+  ++ +S+++   +I V +RI N++FQN
Sbjct: 638 SFFFFMVLDLGNSYVD---KIPVGYRIMNAIFQN 668


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 100 AGVIPGVTWFSFADHQLTSLPAVVNIHTI 14
           AG+  G TW S + + LTS  A  N+  +
Sbjct: 350 AGMTDGTTWLSISQNPLTSQLANYNVKIV 378


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 438 IVNFRIYNSMFQNVDLLLQYRFR 506
           ++N   +N +FQN+  L+++ FR
Sbjct: 184 VINVSFFNYIFQNLGWLIRFSFR 206


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 290 IFMVEYTNLYSAIINKYLCKINSVKKMLKFNIFFSW-RNLSQFYQLLLRNYCEF 448
           +F + Y  L+ A++       +SVK+ L  + FF W ++ S F +  + +  EF
Sbjct: 526 LFKIPYHELFCALLKNPDIISSSVKQSLLLDGFFRWSQHCSNFNKESMLSLREF 579


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 318 YKLVYSTIKIR-YPNSW*VCIRSILRDIIFTNKYTK 214
           YK  Y+  K R Y  SW   IR+ L  ++ TN+Y +
Sbjct: 67  YKRPYAVWKDRGYAYSWGQQIRNYLGRVVNTNQYPR 102


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 354 FILQRYLLIIALYKLVYSTIKIRYPNSW*VCIRSILRDIIFTNK--YTKACIFSTEAEEL 181
           F LQ Y +  A  KLV     +  P+     IR +  +IIF N     +  I+S +  +L
Sbjct: 308 FFLQHYSIQHASSKLVGKYDLVESPDPCMQYIRYVKSEIIFNNSPLTLRNSIYSLKRTDL 367

Query: 180 FPCCI 166
            P C+
Sbjct: 368 -PACL 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,212
Number of Sequences: 5004
Number of extensions: 39869
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)