Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H22
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589     29   1.8  
12_02_0266 - 16582912-16584918,16585041-16585229                       29   2.4  
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406...    29   3.2  
03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995     27   9.7  
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743...    27   9.7  
03_02_0285 - 7096088-7096506,7096817-7096982,7097114-7097296,709...    27   9.7  
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177...    27   9.7  
01_06_0044 - 25922298-25923434                                         27   9.7  

>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
          Length = 503

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 14  DGVNVNNGRQTSELVIGKAEPRHAGNYTC--VPANAKAASVTVHVVQSET 157
           +G N NNG   +  V   A PR A   TC   PA   AA+ T  ++ S T
Sbjct: 49  NGNNGNNGNNGAREVPAAAAPRLATAATCFTAPARLLAAATTAALIASTT 98


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 240 IIFTNKYTKACIFSTEAEELFPCCI 166
           +I   +Y    IFS  A  L+PCCI
Sbjct: 13  LICNGRYESVLIFSVAAHVLYPCCI 37


>11_01_0519 +
           4066776-4066892,4067042-4067099,4067322-4067608,
           4067706-4067822,4067898-4067958,4068042-4068133,
           4068547-4068632,4068926-4068975,4069077-4069117,
           4069222-4069392,4069875-4069942,4070088-4070148,
           4070471-4070757,4072008-4072172,4072759-4072760,
           4072829-4073139,4073600-4073787,4075231-4075482,
           4076035-4076114,4076199-4076399,4076959-4077014,
           4077137-4077328
          Length = 980

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 346 TKVFINNSTIQISIFDHKDTLSEFMVSLYQKYPEGYNIYK*IYESVYL*Y-GS*GI 182
           TKV    ST       H  + ++ ++ +Y K P  YN +K +  S+   Y GS GI
Sbjct: 217 TKVMQRQSTFVFHHTSHPWSKNKILIWMYHKLPHSYNFHKYMVRSMEDDYNGSVGI 272


>03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995
          Length = 173

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 295 KDTLSEFMVSLYQKYPEGYNIYK*IYESVYL*YG 194
           +DT  + +++ YQ  P GY +    Y+S+ + YG
Sbjct: 83  RDTYQKMILAKYQVIPTGYQVISIGYQSLGVVYG 116


>03_04_0053 +
           16873735-16873927,16874011-16874162,16874286-16874380,
           16874704-16874818,16875054-16875343,16875436-16875585,
           16876478-16876598,16876671-16876942,16877466-16877937
          Length = 619

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 296 MVEYTNLYSAIINKYLCKINS 358
           +VEYTNLY  I N Y C+ ++
Sbjct: 188 VVEYTNLYEQIQNGYDCEAHA 208


>03_02_0285 -
           7096088-7096506,7096817-7096982,7097114-7097296,
           7097529-7097768
          Length = 335

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 140 VVQSETPAAMQHGNNSSASVLKIHAFVYLFVNIISLRILLIQTHHE 277
           +V+S   AAM+      AS+L++H F   FVN     ILL  T+ E
Sbjct: 50  IVRSRVAAAMKAEMRMGASLLRLH-FHDCFVNGCDASILLDGTNSE 94


>02_05_0419 -
           28814754-28816114,28816749-28817435,28817554-28817774,
           28818536-28818750
          Length = 827

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 381 IFFLAGEIYHSFINFY*EIIVNFRIYNSMFQNVDLLLQYRFRGL*IKLLSLISR 542
           IF      Y S  +FY +     R    M  +VDL +Q  ++G  + L+SL+SR
Sbjct: 564 IFHFDRNAYWSGPSFYQKYSSRLRGRGPMLFDVDLKVQASYQGEHVPLVSLMSR 617


>01_06_0044 - 25922298-25923434
          Length = 378

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 56  VIGKAEPRHAGNYTCVPANAKAASVTVHVVQSETPAAMQHGNNSSASVLKIHAFVYLFVN 235
           VIG  +  H+G   C P + +   +  H V  ET   +   +N  A  +  H+F  L   
Sbjct: 142 VIGHQDYLHSGLTVCNPVSGERWVLPPHEVSDETVVLLDVNHNDQA--IGTHSFKLLAAQ 199

Query: 236 II 241
           ++
Sbjct: 200 LL 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,752
Number of Sequences: 37544
Number of extensions: 209210
Number of successful extensions: 415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)