Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H22
(542 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.11
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14) 33 0.15
SB_50799| Best HMM Match : I-set (HMM E-Value=0) 32 0.26
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40) 32 0.35
SB_1441| Best HMM Match : I-set (HMM E-Value=0.0096) 31 0.46
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 31 0.61
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 30 1.1
SB_8819| Best HMM Match : I-set (HMM E-Value=0) 30 1.4
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 2.5
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 28 4.3
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 27 7.5
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 27 7.5
SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15) 27 7.5
SB_47276| Best HMM Match : DUF851 (HMM E-Value=9.6) 27 9.9
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 9.9
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39) 27 9.9
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 9.9
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 9.9
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +2
Query: 29 NNGRQTSELVIGKAEPRHAGNYTCVPANAKAASVTVHVV 145
NN R E VI K + H G+YTCVP NA V V V
Sbjct: 314 NNTR--GEHVIEKVKRVHGGDYTCVPYNAVGKGVNVTTV 350
>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
Length = 1931
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 8 VKDGVNVNNGRQTSELVIGKAEPRHAGNYTCVPAN--AKAASVTVHVVQSETPAAMQHGN 181
VKDG + G+ SEL+I + +P G Y CV N + S + HV+ P + +
Sbjct: 1432 VKDGARLP-GQNGSELIIIELKPEDNGTYICVAYNHVTSSKSASGHVIVHSVPVLTKQSS 1490
Query: 182 N 184
+
Sbjct: 1491 D 1491
>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
Length = 1195
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 8 VKDGVNVNNGRQTSE---LVIGKAEPRHAGNYTCVPANAKAASVTVHVVQSETPAAM 169
V++G + + T++ LVI + E R +GNYTC+ +N + V + PA++
Sbjct: 477 VREGAGSSRFKLTNDNKTLVIFQTEYRDSGNYTCIASNRAGNTSLAKQVDIQVPASV 533
Score = 28.3 bits (60), Expect = 4.3
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +2
Query: 23 NVNNGRQTSELVIGKAEPRHAGNYTCV----PANAKAASVTVHV---VQSET-PAAMQHG 178
NV+ R S L + GNY+CV N + VTVHV VQ+ T P + + G
Sbjct: 877 NVSGVRLESTLRLNNTRFGDRGNYSCVFKNHGVNKSSGQVTVHVTPNVQNITAPVSPRLG 936
Query: 179 NNSSASVLKIHAFVYLFVN 235
+N + V + F L VN
Sbjct: 937 DNITL-VCVVRGFPDLSVN 954
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 53 LVIGKAEPRHAGNYTCVPAN-AKAASVTVHVVQSETPAAMQ 172
LVI KAEP +GNY C N A + T VV +E M+
Sbjct: 3684 LVIPKAEPEDSGNYRCQATNDAGTVTKTFKVVVNEQKVVMR 3724
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 5 EVKDG--VNVNNGRQTSE--LVIGKAEPRHAGNYTCVPANAKAASVTVH 139
E+++G V++ R+T L I +P +G YTC+ N KA T H
Sbjct: 3566 ELRNGGRVSLEEDRETQMYFLTITNCKPTDSGKYTCIARN-KAGENTCH 3613
>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
Length = 1604
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +2
Query: 32 NGRQTSELVIGKAEPRHAGNYTCVPANAKAA---SVTVHVVQSETPAAMQHGNNSSASVL 202
+G + +LV+ +A+ AGNYTCV N++ S ++V + T + G + VL
Sbjct: 482 SGDRGRDLVVSRAKKDDAGNYTCVATNSQGVNQHSELLYVKHAPTITTLSTGAFDNGVVL 541
Query: 203 KIHA 214
A
Sbjct: 542 NQRA 545
>SB_1441| Best HMM Match : I-set (HMM E-Value=0.0096)
Length = 249
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +2
Query: 23 NVNNGRQTSELVIGKAEPR-HAGNYTCVPAN----AKAASVTVHVV 145
N+ + +LVI A R H G Y+CVP N AA+VT+ V+
Sbjct: 85 NLLQNTSSGQLVIKTASSRFHGGTYSCVPTNILGRGSAATVTISVL 130
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 2 HEVKDGVNVNNGRQTSELVIGKAEPRHAGNYTCVPANAKAASVTVH 139
H K ++ N G LV+G + G YTCV +N ++ T+H
Sbjct: 2068 HGEKYKISENPGEYLYSLVVGDLKHEDGGRYTCVASN-ESGDATLH 2112
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 20 VNVNNGRQTSELVIGKAEPRHAGNYTCVPANAKAASVTVHVVQSE 154
+N+ T L I EP AG+YTC N S T VQ E
Sbjct: 870 LNIRPRGDTYTLNIHTTEPEDAGSYTCEAQNKMGTSSTTIDVQIE 914
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 44 TSELVIGKAEPRHAGNYTCVPAN-AKAASVTVHVVQSETPAAMQHGNNSSASVLKIHAFV 220
+ +LV+ + GNYTCV N A + S + V +E P + + S S+L
Sbjct: 1699 SGQLVVNNVQRSDFGNYTCVLKNSAGSISASTIVTVNEAPRVV----DFSPSLLAKGQTA 1754
Query: 221 YLFVNIIS 244
Y++ NI S
Sbjct: 1755 YIYCNISS 1762
>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
Length = 1789
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 44 TSELVIGKAEPRHAGNYTCVPAN--AKAASVTVHVVQSETP 160
T ELVI K+ P G YTC N K +S V+ E P
Sbjct: 997 TYELVIKKSTPEDTGTYTCTATNNIGKCSSDFTVNVKGEAP 1037
>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2409
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 8 VKDGVNVNNGRQTSELVIGKAEPRHAGNYTCVPANA----KAASVTVHVVQSETPA 163
V DGV + LVI A+ G Y CV ANA K+ TV + +S T A
Sbjct: 935 VPDGVRIQKV-SPGNLVISIAQKADMGTYQCVAANAVGRRKSRVATVTIKESPTTA 989
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 53 LVIGKAEPRHAGNYTCVPANAKAASVTVHVVQSETPAAMQH 175
L+I P +AG Y CV N + + V ET A +H
Sbjct: 3911 LIIKSPTPLYAGTYKCVATNRRGTNSRDFEVTIETGEAAEH 3951
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 11 KDGVNVNNGRQTSELVIGKAEPRHAGNYTCVPANAKAASVTVHV 142
++G V++ Q+ VI KA+ G Y CVP NA T +V
Sbjct: 1540 RNGFPVSSS-QSGVYVIDKAKEDDQGVYQCVPENAVGNGTTANV 1582
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 53 LVIGKAEPRHAGNYTCVPANAKAASVTVHV 142
L + +A PR +G YTC+ N +T V
Sbjct: 420 LFLPRASPRDSGTYTCIVTNLLQRRITESV 449
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 75 HVTPGITPAYQLMQRRPQSPYT 140
H T G +PAY LM+R+P++ ++
Sbjct: 87 HPTTGSSPAYLLMRRQPRTRFS 108
>SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15)
Length = 978
Score = 27.5 bits (58), Expect = 7.5
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 23 NVNNGRQTSELVIGKAEPRHAGNYTCVPAN--AKAASVTVHVVQSETPAAMQHGNNSSAS 196
NV Q+ + KA +TCVP N K AS +V V E P NSS
Sbjct: 268 NVMLVTQSDSEYVAKATNEGINTFTCVPVNIVGKGASSSVIVTAKEGPVIAAF--NSSNL 325
Query: 197 VLKIHAFVYLF 229
V+ A V L+
Sbjct: 326 VVVEGASVNLY 336
>SB_47276| Best HMM Match : DUF851 (HMM E-Value=9.6)
Length = 154
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 263 QTHHEFG*RIFMVEYTNLYSAIINKYLCKINSVKKMLKFNIFFSWRNLS 409
Q +G +I M Y N S+++ KY+ SV ++ + W ++S
Sbjct: 8 QQREMYGNKICMDVYVNSLSSMVTKYVWLSMSVNSLISMVTKYVWLSMS 56
>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1565
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 38 RQTSELVIGKAEPRHAGNYTCVPANAK---AASVTVHVVQSET 157
+ ++LVI E AG Y CV N++ +A++++HV S +
Sbjct: 322 KSKAQLVIRGVEGADAGEYKCVAINSQGQGSATISLHVKVSSS 364
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 11 KDGVNV-NNGRQTSELVIGKAEPRHAGNYTCVPANAKAASVTVHVVQSETPAAMQ 172
K G V + G+ ++ LVI K NYTC N K S+ V ++ + P + Q
Sbjct: 952 KAGTKVLSTGQGSALLVIDKMSKDDIANYTCNATNYKTDSL-VFALKIDLPVSSQ 1005
>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
Length = 378
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 11 KDGVNVNNGRQTSELVIGKAEPRHAGNYTCVPANAKAA-SVTVHVVQSETPAAMQHGNNS 187
+DGV V+ +TS AG YTC NA + + TV V + P + N+
Sbjct: 242 RDGVVVS---RTSVYHSNSVTRSEAGTYTCTATNAMGSDTTTVQVTVNYKPEMVSSTTNT 298
Query: 188 SA 193
S+
Sbjct: 299 SS 300
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.1 bits (57), Expect = 9.9
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 61 RQS*TTSRRELHLRTS*CKGGLSHRTRSS--K*NTGRYATRKQFLSFRTKDTRFRIFICK 234
RQ SR HLR +H +SS K N + K + + R RIFI
Sbjct: 503 RQVRVESRLSRHLRAK------THLAKSSFVKCNNSGFQRYKVSIQELIEQNRGRIFIKL 556
Query: 235 YYIPQDTSDTNSP*IRITYLYGRI 306
Y IP+ T T++ R + GRI
Sbjct: 557 YQIPKQTQSTSNK--RNQFWTGRI 578
>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1554
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 HEVKDGVNVNNGRQTSELVIGKAEPRHAGNYTCVPANAKAASVTVHVVQSETPAAMQHGN 181
HE ++ G ++ LVI K + NYTC AN V + + + + + +
Sbjct: 649 HEKSGDKLLSTGLGSALLVIPKVMTKDLTNYTCTAANYMTDKVVLTIEELDDAIILAQKD 708
Query: 182 NSSASVLK-IHAFVYLFVNII 241
S S L I LFV +I
Sbjct: 709 ALSDSALAGIITGCTLFVLVI 729
>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 820
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 92 YTCVPANAKAASVTVHVVQSETPAAMQHGNNSSASVLK 205
YT VP+N K + V S+ PA +HG S A + K
Sbjct: 346 YTGVPSNKKPGTGYKEVPSSKKPAT-EHGKRSLAKLAK 382
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,600
Number of Sequences: 59808
Number of extensions: 270459
Number of successful extensions: 705
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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