Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H22
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.053
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.22 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.29 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.2  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.053
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 20  VNVNNGRQ-TSELVIGKAEPRHAGNYTCVPANAKA 121
           V+V N  Q  S L+I    P H GNY+CV  N  A
Sbjct: 658 VHVTNMDQYNSILMIEHLSPDHNGNYSCVARNLAA 692



 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 44   TSELVIGKAEPRHAGNYTCVPANAKAASVTVHVVQSETP--AAMQHGNNSSASVLKIH 211
            + EL++   + +  G+YTC   NA+      + +  + P  A + +  +S++S + +H
Sbjct: 1362 SGELMLSNLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLH 1419


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 44  TSELVIGKAEPRHAGNYTCVPANAKA 121
           +S L I      H+G+YTCV AN  A
Sbjct: 671 SSLLSITNLAAEHSGDYTCVAANPAA 696



 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 44   TSELVIGKAEPRHAGNYTCVPANAKAASVTVHVVQSETP--AAMQHGNNSSASVLKIH 211
            + EL++   + +  G+YTC   NA+      + +  + P  A + +  +S++S + +H
Sbjct: 1366 SGELMLSNLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLH 1423


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 41  QTSELVIGKAEPRHAGNYTCVPANA 115
           + S L+I     RHAG Y C   NA
Sbjct: 639 RVSMLMISVITARHAGEYVCTAENA 663


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  LVIGKAEPRHAGNYTC 100
           L + K +  HAGNYTC
Sbjct: 367 LYLTKVQLIHAGNYTC 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,617
Number of Sequences: 438
Number of extensions: 2764
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)