Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H22
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15430.1 68417.m02360 early-responsive to dehydration protein...    28   3.5  
At5g53740.1 68418.m06678 hypothetical protein                          27   6.1  
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr...    27   6.1  
At4g10695.1 68417.m01749 hypothetical protein                          27   8.1  
At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ...    27   8.1  

>At4g15430.1 68417.m02360 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 756

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 366 FFTEFILQRYLLIIALYKLVYSTIKIRYPNSW*VCIRSILRD 241
           F+T FIL+R    IAL +L +     R PN + V +R+I  D
Sbjct: 170 FWTCFILKREYQNIALMRLQFLANDQRRPNQFTVLVRNIPAD 211


>At5g53740.1 68418.m06678 hypothetical protein 
          Length = 275

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 VEYTNLYSAIINKYLCKINSVKKMLKFNIFFSWRNL 406
           ++ T  +S+++N   CKI   K + K+N+  S + L
Sbjct: 157 IDLTKCWSSLLNIQGCKIEIFKSVFKWNVLLSTQPL 192


>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
           profile: PF00005 ABC transporters; similar to TAP1
           protein (transporter of processed antigen) GB:AAD53033
           (Oncorhynchus mykiss); identical to cDNA transporter
           associated with antigen processing-like protein (TAP1)
           GI:19335721
          Length = 700

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 RLCISWYAGVIPGVTWFSFAD 59
           R CI +   ++PG +W+SF+D
Sbjct: 88  RQCIDFLRTILPGGSWWSFSD 108


>At4g10695.1 68417.m01749 hypothetical protein
          Length = 234

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 279 NSW*VCIRSILRDIIFTNKYTKACIFSTEAEELFPCCIAAGVSL*TTCTV 130
           + W +  RS L D+ F N YT+  I   + E  F     + V    TC V
Sbjct: 73  DGWLLMRRSSLVDMFFLNPYTRELINLPKCELSFQAVAFSSVPTSGTCAV 122


>At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to
           sodium transporter AtHKT1 [Arabidopsis thaliana]
           gi|7716474|gb|AAF68393
          Length = 506

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 375 SLIFFLAGEIYHSFINFY*EIIVNF 449
           +++ FL GEI+ SF+N Y      F
Sbjct: 86  TILMFLGGEIFTSFLNLYVSYFTKF 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,062,573
Number of Sequences: 28952
Number of extensions: 185508
Number of successful extensions: 391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)