Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H21
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    28   0.95 
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    25   8.9  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   8.9  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 370 SWSNMWGNDGYVLMSMREN-NCGVQSAPTY 456
           +W N+W  D   + S R N N  + +AP Y
Sbjct: 318 TWDNLWTQDPPPMQSFRPNYNIAIPNAPAY 347


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 216 RNRCGPQDLQFLLERCI 266
           R  C P  L FL E+CI
Sbjct: 217 RGTCSPSRLSFLTEKCI 233


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 160 TNNENALKLALFKHGPISVAIDAAHKTFSFYSNGVYFEPKCKNKVDELDHAVL 318
           +++++++ L    H P+SV    +H T S  +N  +  P  K +++ +D   L
Sbjct: 611 SDSQSSIDLDSSFHYPVSVDSQLSHSTGSLMAN--FSSPTKKRRLESVDFIFL 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,612
Number of Sequences: 5004
Number of extensions: 42861
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)