Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H20
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   2.5  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   4.4  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   7.6  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 190  LRLLNFLYQFYEFRINLMY 246
            L+LL  LYQF +FR+NL +
Sbjct: 1033 LKLLVELYQFADFRLNLKF 1051


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 390 CDYEFRVAYTHAYIYFWLMLNEVL 461
           C Y FR  YT+  +  W   NEV+
Sbjct: 16  CIYVFRCLYTNHAVVSWNQTNEVI 39


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 339 SHFKLALKGYVRISLRICDYEFRVAYTHAYI 431
           +H +  + G  R++L +  ++FRV + H Y+
Sbjct: 120 AHSQKRILGLERMTLELICFDFRVRHPHNYM 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,973
Number of Sequences: 5004
Number of extensions: 36099
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)