Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H20
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170...    28   4.3  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    28   4.3  

>08_02_1441 -
           27116242-27116354,27116646-27116742,27116841-27117058,
           27117279-27117422,27117512-27117608,27117932-27118026,
           27118140-27118231,27118326-27118471,27118565-27118664,
           27118857-27118964,27119040-27119085,27119210-27119345,
           27119847-27120044
          Length = 529

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 426 MHACMRHGIRNHRYVTKYVRSLLRP 352
           M+  +R     HR V KY+RS+L+P
Sbjct: 183 MYNAVRRAAEVHRQVRKYMRSILKP 207


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 343 WLHSACHYCRSDRFNPMVTCFCFLFFGQIFAIHTSN*YETHK-IDIKSSKALDRNHKEMR 167
           W    CH+  S R+ P    +   F  Q+FA+H +  +E  + +  KS   +     +M 
Sbjct: 368 WGLLVCHH-ESPRYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDML 426

Query: 166 MRKT 155
           +R++
Sbjct: 427 LRES 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,774,143
Number of Sequences: 37544
Number of extensions: 184149
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)