Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H20
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    27   8.9  

>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 346  KWLHSACHYCRSDRFNPMVTCFCF 275
            K ++ A +YC S  F   ++CFCF
Sbjct: 984  KSVYEAVNYCISQNFMYYMSCFCF 1007


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 109 NSVSSHTKQ*RVLSCVFYASAFPCGYGLRLLNFLYQFYEFRINL 240
           N  S +T+    L+CVF+ + FP G  + +  F  +   F I L
Sbjct: 264 NDSSKNTQLVLFLTCVFFIAQFPIGISIGVSYFFSETPGFTIML 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,258,970
Number of Sequences: 27780
Number of extensions: 193379
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)