Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H19
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 50 1e-07
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 49 2e-07
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 40 1e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 39 3e-04
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 34 0.009
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 33 0.022
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 1.1
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 1.4
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 3.3
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 4.3
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 5.7
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 5.7
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 25 5.7
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 24 7.6
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 24 7.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 7.6
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 24 7.6
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 24 10.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 10.0
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 24 10.0
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 24 10.0
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 50.0 bits (114), Expect = 1e-07
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +2
Query: 104 TSDGSSEEEFVVEKVLDKRTVK--GKIQYLLKWKGYKE-DESTWEPVEN-LDCEELIKAF 271
+ D +S+EEF VE +LD R K QY LKW+GY + ++TW E+ C ELI A+
Sbjct: 167 SEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226
Query: 272 XXXXXXXXXXXXXXXXGKKRVRELSEETSTGRQGRATSVSSI 397
+ R R +E + + + S SI
Sbjct: 227 WESRGGKPDLSSLIRLTRSRARSSNEASYVEKDESSNSDDSI 268
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 49.2 bits (112), Expect = 2e-07
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Frame = +2
Query: 92 KKTETSDGSSEEEFVVEKVLDKRTVK--GKIQYLLKWKGYKE-DESTWEPVENLD-CEEL 259
K+ E + E+E+VVEKVL R + G +YLLKW+GY + ++TW + C++L
Sbjct: 68 KEEEGGEEEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQL 127
Query: 260 IKAF 271
I+A+
Sbjct: 128 IEAY 131
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Frame = +2
Query: 101 ETSDGSSEEE-FVVEKVLDKRTVKGKI-QYLLKWKGYKEDESTWEPVENL-DCEELIK 265
++++G ++ + + VE +L R K I +Y +KW GY ++TWEP +NL E+++K
Sbjct: 11 DSNEGETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 38.7 bits (86), Expect = 3e-04
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 122 EEEFVVEKVLDKRTVK-GKIQ-YLLKWKGYKEDESTWEPVENL 244
+EE+ VE+++D++ + G ++ Y ++W Y TWEP ENL
Sbjct: 5 QEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 33.9 bits (74), Expect = 0.009
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 89 DKKTETSDGSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWEPVE 238
D + E + EE +VE+++ T +GK +Y +KW+ D TWE +
Sbjct: 290 DIERERKNMLFEEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWEDAD 340
Score = 27.1 bits (57), Expect = 1.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +2
Query: 86 KDKKTETSDGSSEE-EFVVEKVLDKRT--------VKGKIQYLLKWKGYKEDESTWEPVE 238
+D++ E + EE E +++ VL+ R K QYL+KW+ +TWE
Sbjct: 191 EDEEEEVEEQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQEVSHLHNTWEDYS 250
Query: 239 NL 244
L
Sbjct: 251 TL 252
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 32.7 bits (71), Expect = 0.022
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 83 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWE 229
+K++K E + + + +V K L+ G ++YL+KWK D TWE
Sbjct: 276 EKERKRENYEEYKQVDRIVAKHLNS---DGSVEYLVKWKQLLYDFCTWE 321
Score = 31.5 bits (68), Expect = 0.050
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +2
Query: 98 TETSDGSSEEEFVVEKVLDKRTVKGK--------IQYLLKWKGYKEDESTWEPVENL 244
TE S+ E+ ++ VLD R ++G ++L+KW + TWEP N+
Sbjct: 181 TEVSE-EPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNI 236
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 137 VEKVLDKRTVKGKIQYLLKWKGYKEDESTW 226
VE ++ ++ +K QY +KW G +TW
Sbjct: 822 VEALIGRQKLKKSFQYEIKWFGKPHKYNTW 851
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 203 YKEDESTWEPVENLDCEELIKAF 271
Y++D++ +EP ENL+ +EL + F
Sbjct: 60 YQKDKNIYEPKENLEEKELSEGF 82
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 3.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 44 FTVYHINYY-LEM-GKKDKKTETSDGSSEEEFVVEKVLDKRTVK 169
FT +HINYY + M G K +K + SS + L ++T++
Sbjct: 108 FTKHHINYYHIAMPGSKHRKNDCISSSSNPDISDVDDLVRKTLQ 151
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 71 LEMGKKDKKTETSDGSSEEEFVVEKV 148
LE KDKK E+ S +EE VE V
Sbjct: 35 LETSAKDKKHESPSMSEDEEGSVENV 60
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 116 SSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDE 217
SS E+ + E V D ++ KIQ ++W+ + E +
Sbjct: 205 SSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQ 238
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 5.7
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 83 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCEELI 262
K D+ E DG + +FV ++ K + + L+ +GY + + + +E+ D EE++
Sbjct: 428 KYDRMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSD---QEIEDADEEEVL 484
Query: 263 K 265
+
Sbjct: 485 E 485
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 65 YYLEMGKKDKKTETSDGSSEEEFVVEKVLD 154
Y LEMG ++K + S S +F+V LD
Sbjct: 16 YELEMGPINEKLDRSLNSHLNQFIVHSSLD 45
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.2 bits (50), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 152 RELFQQQTLLHLIHRWFQFFY-LFCPFLNNNLCDI 51
+ + Q LLH+I Q L PFLN+NL D+
Sbjct: 605 KSMHLQVQLLHIISSLCQSSSALILPFLNHNLPDV 639
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 7.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 233 LAPKCSHLLYNLSISINIVSFPSQYVYRELFQQQTLLHLIHRWFQF 96
L P H L N +++ + P + Q+ LL L RWF+F
Sbjct: 395 LTPTKCHSLLNRKLTVLTLLQPDSEQF--FSSQEELLRLGKRWFRF 438
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.2 bits (50), Expect = 7.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 239 SLLAPKCSHLLYNLSISINIVSFPSQYVYRELFQQQTLLHLIHRWFQF-FYL 87
S L +CS +LY L +N+V P Y Y+ + + L+ H Q FYL
Sbjct: 866 SSLQDECSDVLYLLMEFLNMVCSPKSY-YKLIPSFEQLIQDFHIQPQVAFYL 916
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 161 TVKGKIQYLLKWKGYKEDESTWEPVENLD 247
++K +L KWK S +PV+NLD
Sbjct: 195 SIKSLTTWLPKWKKNDFKTSNSQPVKNLD 223
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 131 TLLHLIHRWFQFFYLFCPFLN 69
T L + RWF FY F LN
Sbjct: 56 TKLEVPKRWFWHFYAFISLLN 76
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 173 KIQYLLKWKGYKEDESTWEPVENLDCEELI 262
K YLL + K DE WE ++ + C ++
Sbjct: 981 KNSYLLLFASAKPDEDFWESIDTM-CRAVV 1009
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 138 TTNSSSLDPSLVSVFLSFLPIS 73
TTNS S + FL +LPIS
Sbjct: 385 TTNSPLTPQSFTNSFLGYLPIS 406
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 23.8 bits (49), Expect = 10.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 129 SLLLKKFSINVL*RERYNIY*NGKVIKKMRAL 224
S L++ +SI ++ YNIY +G V KKM ++
Sbjct: 251 SCLVRVYSIGII----YNIYQSGFVNKKMESV 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,574
Number of Sequences: 5004
Number of extensions: 23823
Number of successful extensions: 109
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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