Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H19
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 68 3e-12
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 68 3e-12
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 66 9e-12
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 66 9e-12
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 66 9e-12
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 66 9e-12
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 66 9e-12
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 52 1e-07
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 49 1e-06
U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical pr... 49 1e-06
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 44 4e-05
U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical pr... 37 0.005
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 35 0.019
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 33 0.100
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.30
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 30 0.53
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 30 0.53
AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical... 29 0.93
Z81035-4|CAB02737.1| 503|Caenorhabditis elegans Hypothetical pr... 28 2.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 2.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 2.1
AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical ... 27 3.7
AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical ... 27 3.7
Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical pr... 27 5.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 5.0
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 6.5
U40419-2|AAK67217.1| 269|Caenorhabditis elegans Hypothetical pr... 27 6.5
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.5
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.5
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 6.5
AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine r... 27 6.5
AC084197-37|AAG23463.1| 422|Caenorhabditis elegans Hypothetical... 26 8.7
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 67.7 bits (158), Expect = 3e-12
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = +2
Query: 116 SSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCEELIKAF 271
SS FVVEKVL+KR +G +Y +KW+G+ E E +WEP+ENL C+ +I+ +
Sbjct: 32 SSSNVFVVEKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 67.7 bits (158), Expect = 3e-12
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = +2
Query: 116 SSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCEELIKAF 271
SS FVVEKVL+KR +G +Y +KW+G+ E E +WEP+ENL C+ +I+ +
Sbjct: 32 SSSNVFVVEKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 66.1 bits (154), Expect = 9e-12
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 MGKKDKKTETSDGSSEEEFVVEKVLDKRTVK-GKIQYLLKWKGYKEDESTWEPVENLDCE 253
M K K + + F+VEKVLDKRT K G+ ++L++W+G+ E +S+WEP ENL C
Sbjct: 1 MSSKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCV 60
Query: 254 ELIKAF 271
E++ F
Sbjct: 61 EMLDEF 66
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 66.1 bits (154), Expect = 9e-12
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 MGKKDKKTETSDGSSEEEFVVEKVLDKRTVK-GKIQYLLKWKGYKEDESTWEPVENLDCE 253
M K K + + F+VEKVLDKRT K G+ ++L++W+G+ E +S+WEP ENL C
Sbjct: 1 MSSKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCV 60
Query: 254 ELIKAF 271
E++ F
Sbjct: 61 EMLDEF 66
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 66.1 bits (154), Expect = 9e-12
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 MGKKDKKTETSDGSSEEEFVVEKVLDKRTVK-GKIQYLLKWKGYKEDESTWEPVENLDCE 253
M K K + + F+VEKVLDKRT K G+ ++L++W+G+ E +S+WEP ENL C
Sbjct: 1 MSSKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCV 60
Query: 254 ELIKAF 271
E++ F
Sbjct: 61 EMLDEF 66
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 66.1 bits (154), Expect = 9e-12
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 MGKKDKKTETSDGSSEEEFVVEKVLDKRTVK-GKIQYLLKWKGYKEDESTWEPVENLDCE 253
M K K + + F+VEKVLDKRT K G+ ++L++W+G+ E +S+WEP ENL C
Sbjct: 1 MSSKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCV 60
Query: 254 ELIKAF 271
E++ F
Sbjct: 61 EMLDEF 66
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 66.1 bits (154), Expect = 9e-12
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 MGKKDKKTETSDGSSEEEFVVEKVLDKRTVK-GKIQYLLKWKGYKEDESTWEPVENLDCE 253
M K K + + F+VEKVLDKRT K G+ ++L++W+G+ E +S+WEP ENL C
Sbjct: 1 MSSKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCV 60
Query: 254 ELIKAF 271
E++ F
Sbjct: 61 EMLDEF 66
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +2
Query: 107 SDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCEELIKAF 271
+DGS E + VE +L+ R KGK ++ +KW GY ++WEP EN+ LI+AF
Sbjct: 2 ADGS--ELYTVESILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIEAF 54
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENL-DCEEL 259
++ ++ E +G S+E F VEK+L + + ++W GY DE TWEP E+L +C
Sbjct: 8 EESREPEAREGKSDEIFEVEKILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDLQECASE 67
Query: 260 IKA 268
+ A
Sbjct: 68 VVA 70
>U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical
protein F32E10.2 protein.
Length = 270
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Frame = +2
Query: 86 KDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKE---DESTWEPVENLD-CE 253
K K T+ SD SS E + VE+VL R VKG YL++WKGY + WE E+LD C+
Sbjct: 73 KKKVTKQSDDSSGE-YAVERVLAHRKVKGSPLYLVQWKGYPHPVWNSEMWE--EDLDNCK 129
Query: 254 ELIKAF 271
+L+ A+
Sbjct: 130 DLLAAY 135
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 44.0 bits (99), Expect = 4e-05
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 152 DKRTVKGKIQYLLKWKGYKEDESTWEPVENLD-CEELIK 265
DKR K YL+ W+GY E TWEP ENL+ CEEL K
Sbjct: 42 DKRR-HSKYAYLVHWRGYDWKERTWEPEENLENCEELQK 79
>U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical
protein F32E10.6 protein.
Length = 374
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 95 KTETSDGSSEEEFVVEKVLDKRTV--KGKIQYLLKWKGYKEDESTWEPVEN--LDCEELI 262
K D +E+F VEK++ R K K +L+ W+GY S E EN +C++L+
Sbjct: 103 KITNQDDDPDEDFAVEKIIAHRFSGKKNKPLFLVMWRGYPNPVSHSEMWENELSNCKDLL 162
Query: 263 KAF 271
+A+
Sbjct: 163 EAY 165
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 35.1 bits (77), Expect = 0.019
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 83 KKDKKTETSDGSSEEEFVVEKVLDKRTVK-GKIQYLLKWKGYKEDESTWEPVENLDCEEL 259
K E + + + +V++V+D T G+ L+KWK +E TWEP+E + +++
Sbjct: 1088 KMSSYIEDDEDFNSDFVIVDRVVDLITEDDGQEFVLIKWKSLGYEEVTWEPIEMIPADKV 1147
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 32.7 bits (71), Expect = 0.100
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 119 SEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENL 244
SEE F K K + +L+KW GY E TWEP N+
Sbjct: 77 SEERF---KRTKKPQLISNYFFLVKWLGYGNKEMTWEPESNI 115
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 0.30
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 125 EEFVVEKVLDKRTVKGKI--QYLLKWKGYKEDESTWEPVENLDCEELIKAF 271
E V + R G + +YL+KW G + TWE E + E IKA+
Sbjct: 313 ERVVAHQTSRDRAADGSMATEYLIKWSGLPYSDCTWED-EKMVAPEQIKAY 362
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 30.3 bits (65), Expect = 0.53
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 GSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWE 229
G E + ++++ ++ K + YL+KWK D++TWE
Sbjct: 483 GIKPEWMQIHRIINHQSYAKSQQDYLVKWKELSYDQATWE 522
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 30.3 bits (65), Expect = 0.53
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 GSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWE 229
G E + ++++ ++ K + YL+KWK D++TWE
Sbjct: 483 GIKPEWMQIHRIINHQSYAKSQQDYLVKWKELSYDQATWE 522
>AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical
protein Y62E10A.16 protein.
Length = 496
Score = 29.5 bits (63), Expect = 0.93
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +2
Query: 11 HFKVLVLQRRCFTVYHINYYLE-----MGKKDKKTETSDGSSEEE 130
HF+ L+ Q C T +++N YL+ + D++ E DG EE+
Sbjct: 450 HFQYLIHQPICSTGHYVNKYLDDQNSTDDEDDEEEEDDDGDDEED 494
>Z81035-4|CAB02737.1| 503|Caenorhabditis elegans Hypothetical
protein C15H11.5 protein.
Length = 503
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 83 KKDKKTETSDGSSEEEFV-VEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCEEL 259
K DK + + G + EF V+ ++ R +IQY +KW + + T E L C E
Sbjct: 28 KCDKISTQNTGKVDTEFYEVQDIVRSRIEGREIQYTVKWTNWNGGD-TEEAERRLVCTEK 86
Query: 260 IKAF 271
+ +
Sbjct: 87 LMGY 90
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 71 LEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVEN 241
LE K K+TE + S +E +KVL K+T K K K K E +E+
Sbjct: 13616 LESETKSKQTEEAPKESVDEKPKKKVLKKKTEKSDSSISQKSKSAKSTVDAAETLES 13672
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 71 LEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVK 169
LE K KKTE + S +E +KVL K+T K
Sbjct: 9983 LESETKSKKTEEAPKESVDEKPKKKVLKKKTEK 10015
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 71 LEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVEN 241
LE K K+TE + S +E +KVL K+T K K K K E +E+
Sbjct: 13616 LESETKSKQTEEAPKESVDEKPKKKVLKKKTEKSDSSISQKSKSAKSTVDAAETLES 13672
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 71 LEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVK 169
LE K KKTE + S +E +KVL K+T K
Sbjct: 9983 LESETKSKKTEEAPKESVDEKPKKKVLKKKTEK 10015
>AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical
protein Y54F10BM.10 protein.
Length = 302
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 173 KIQYLLKWKGYKEDESTWEPVENLDCEEL 259
KI YL +WK K + EP+EN+ E+L
Sbjct: 190 KITYLEQWKLTKSFKYFGEPLENIPLEKL 218
>AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical
protein ZK973.2 protein.
Length = 865
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 74 EMGKKDKKTETSDGSSEEEFVVEKVLDKR 160
E+ K+ K+ + D SSEE+ VEK+ D +
Sbjct: 354 EVQKQRKRPQKQDSSSEEDDEVEKIRDPK 382
>Z92785-1|CAB07199.2| 299|Caenorhabditis elegans Hypothetical
protein F31E9.2 protein.
Length = 299
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 256 LFTIKILYWLPSALIFFITFPFQ*ILYLSLHSTFIENFF 140
LF LY LPS +++ +TF ++ L TF +FF
Sbjct: 7 LFLASTLYGLPSLILYILTF----VVILRHRKTFDSSFF 41
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 71 LEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVK 169
LE K KKTE + S +E +KVL K+T K
Sbjct: 9963 LESETKSKKTEEAPKESVDEKPKKKVLKKKTEK 9995
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 GSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWE 229
G E + ++++ + K + YL+KWK + +TWE
Sbjct: 495 GVKPEWMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWE 534
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 GSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWE 229
G E + ++++ + K + YL+KWK + +TWE
Sbjct: 495 GVKPEWMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWE 534
>U40419-2|AAK67217.1| 269|Caenorhabditis elegans Hypothetical
protein C27F2.5 protein.
Length = 269
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 RHQERERKNKKTRRSWQKTCARV 342
RH++ +KN + RR +Q+ CA V
Sbjct: 54 RHRDEIKKNSQFRRHFQEMCASV 76
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 171 PFTVRLSRTFSTTNSSSLDPSLVSVF 94
PF V L F +S L+P LVSVF
Sbjct: 871 PFCVDLIEQFHKRSSVQLEPGLVSVF 896
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 171 PFTVRLSRTFSTTNSSSLDPSLVSVF 94
PF V L F +S L+P LVSVF
Sbjct: 871 PFCVDLIEQFHKRSSVQLEPGLVSVF 896
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 GSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWE 229
G E + ++++ + K + YL+KWK + +TWE
Sbjct: 495 GVKPEWMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWE 534
>AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine
receptor, class z protein28 protein.
Length = 321
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 239 SLLAPKCSHLLYNLSISINIVSFPSQYVYRELFQQQTLLHLIHRWFQFFY 90
+ LA S+ NLS I V Y++ ++F LL I R+F F++
Sbjct: 77 TFLAIVTSNAFLNLSTLILCVCLFYLYIFDQVFHLIILLLAIQRFFLFYF 126
>AC084197-37|AAG23463.1| 422|Caenorhabditis elegans Hypothetical
protein Y73B6BL.25 protein.
Length = 422
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 161 TVKGKIQYLLKWKGYKEDESTWEPVENLDCEEL 259
T+ I + K K+ + W+PV+N D EL
Sbjct: 143 TISDPILRMYSVKSCKKSDEVWKPVDNDDLPEL 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,771,116
Number of Sequences: 27780
Number of extensions: 128941
Number of successful extensions: 556
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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