Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H19
(398 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 56 7e-09
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 50 4e-07
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 42 2e-04
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 36 0.008
At2g47450.1 68415.m05922 chloroplast signal recognition particle... 33 0.070
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 31 0.21
At2g25800.1 68415.m03096 expressed protein 29 1.1
At5g20680.1 68418.m02456 expressed protein predicted proteins, A... 28 2.6
At4g01870.1 68417.m00245 tolB protein-related contains weak simi... 28 2.6
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 28 2.6
At2g31305.1 68415.m03822 expressed protein 28 2.6
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 28 2.6
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 4.6
At1g54500.1 68414.m06216 rubredoxin family protein similar to SP... 27 4.6
At3g43480.1 68416.m04609 hypothetical protein hypothetical prote... 27 6.1
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 27 6.1
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 27 6.1
At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS cla... 27 6.1
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla... 26 8.0
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 26 8.0
At3g43470.1 68416.m04608 hypothetical protein 26 8.0
At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase sm... 26 8.0
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 56.4 bits (130), Expect = 7e-09
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 74 EMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENL-DC 250
E G+ + E E + +E + KR KGK+QYL+KW+G+ E +TWEP+ENL
Sbjct: 89 EEGEGEGGQEERPKLDEGFYEIEAIRRKRVRKGKVQYLIKWRGWPETANTWEPLENLQSI 148
Query: 251 EELIKAF 271
++I AF
Sbjct: 149 ADVIDAF 155
>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical to
chromomethylase CMT2 [Arabidopsis thaliana] GI:14583094
Length = 1295
Score = 50.4 bits (115), Expect = 4e-07
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Frame = +2
Query: 98 TETSDGSSEEEFVVEKVLD------KRTVKGKIQYLLKWKGYKEDESTWEPVENL-DCEE 256
+ + D S EE+ VEK++D +T K +++ + WKGY+ DE TWE E L +C++
Sbjct: 826 SSSDDDSDSEEYEVEKLVDICFGDHDKTGKNGLKFKVHWKGYRSDEDTWELAEELSNCQD 885
Query: 257 LIKAF 271
I+ F
Sbjct: 886 AIREF 890
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Frame = +2
Query: 74 EMGKKDKKTETSDGSSEE--EFVVEKVLD------KRTVKGKIQYLLKWKGYKEDESTWE 229
E+ + D E S G+ E EF VEK L + T + +Q +++WKGY TWE
Sbjct: 318 EVEENDDIDEASTGAELEPGEFEVEKFLGIMFGDPQGTGEKTLQLMVRWKGYNSSYDTWE 377
Query: 230 PVENL-DCEELIKAF 271
P L +C+E +K +
Sbjct: 378 PYSGLGNCKEKLKEY 392
>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
to chromomethylase CMT3 [Arabidopsis thaliana]
GI:14583092, GI:14647157
Length = 839
Score = 36.3 bits (80), Expect = 0.008
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +2
Query: 86 KDKKTETSDGSSEEEFVVEKVLD------KRTVKGKIQYLLKWKGYKEDESTWEPVENL- 244
+D E+ + E F V+K++ K+ +K + ++W Y + TWEP+E L
Sbjct: 367 EDVSEESENEDDGEVFTVDKIVGISFGVPKKLLKRGLYLKVRWLNYDDSHDTWEPIEGLS 426
Query: 245 DCEELIKAF 271
+C I+ F
Sbjct: 427 NCRGKIEEF 435
>At2g47450.1 68415.m05922 chloroplast signal recognition particle
component (CAO) nearly identical to CAO [Arabidopsis
thaliana] GI:4102582
Length = 373
Score = 33.1 bits (72), Expect = 0.070
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 125 EEFVVEKVLDKRTVK-GK-IQYLLKWKGYKEDESTWEPVENLD 247
E V E V+ KR GK I+YL+KW + +TWEP +N+D
Sbjct: 318 EYAVAESVIGKRVGDDGKTIEYLVKWTDMSD--ATWEPQDNVD 358
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 68 YLEMGKKDKKTETSDGSSEEEFVVEKVLDKRTV-KGKIQYLLKWK 199
Y E ++ E D SS V K++ RT +G ++YL++WK
Sbjct: 63 YEETTSSVEEAEEDDESSSSYGEVNKIIGSRTAGEGAMEYLIEWK 107
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 62 NYYLEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWE 229
N++ +M + + E V+++L R G+++YL+K+K DE WE
Sbjct: 167 NFHRQMESFNNSEDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECYWE 222
>At2g25800.1 68415.m03096 expressed protein
Length = 996
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 122 EEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLD 247
E E V+ ++ K +K +I L +W + W+P+ENL+
Sbjct: 592 EAETVIANLV-KDWIKARIDRLKEWVDRNLQQEVWKPLENLE 632
>At5g20680.1 68418.m02456 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 551
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 86 KDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKE 211
K+ ++ D EEE VE+V T +GKI + + KG E
Sbjct: 100 KEDSSDNKDTEEEEEKQVEEVTVSNTNRGKIPTIEEKKGEHE 141
>At4g01870.1 68417.m00245 tolB protein-related contains weak
similarity to TolB protein precursor (Swiss-Prot:P44677)
[Haemophilus influenzae]
Length = 652
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 188 LKWKGYKEDESTWEPVENLDCEEL 259
L W GY++ TW + LD +L
Sbjct: 605 LTWNGYEDGTPTWHTADELDLSQL 628
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 86 KDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCE 253
KD++ + D +EE K + K+ +K K++ +L G+K+ E ++ D E
Sbjct: 307 KDERMKKEDDVRKEELKRLKNVKKKEIKEKMKKVLSVAGFKDGEECPLDAKDFDDE 362
>At2g31305.1 68415.m03822 expressed protein
Length = 107
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 71 LEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDC 250
L + +K KK DG+ + EF + K++ K K K K + ED+S E N C
Sbjct: 32 LRLNRKKKKVSWKDGTVDNEF-----MQKKSSK-KCCIFHKQKPFDEDDSEEEDDNNHHC 85
Query: 251 E 253
+
Sbjct: 86 D 86
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 179 QYLLKWKGYKEDESTWE 229
+YL+KW+G E+TWE
Sbjct: 554 EYLVKWQGLSYAEATWE 570
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 167 KGKIQYLLKWKGYKEDESTWEPVE 238
+G + +KW G DE TWE +E
Sbjct: 600 EGNQEAYVKWTGLAYDECTWESLE 623
>At1g54500.1 68414.m06216 rubredoxin family protein similar to
SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas};
contains Pfam profile PF00301: Rubredoxin
Length = 195
Score = 27.1 bits (57), Expect = 4.6
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +2
Query: 56 HINYYLEMGKKDKKT--ETSDGSSEEEFV-VEKVLDKRTVKGKIQ------YLLKWKGYK 208
H + YL + + D T +SD + E E VE ++KR ++ K Y + GYK
Sbjct: 49 HHSRYLAVSRDDAATPLSSSDQTQETETKEVEDTIEKRRMEEKFAVLNTGIYECRSCGYK 108
Query: 209 EDESTWEP 232
DES +P
Sbjct: 109 YDESAGDP 116
>At3g43480.1 68416.m04609 hypothetical protein hypothetical protein
At2g15180 - Arabidopsis thaliana, EMBL:AC006298
Length = 161
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 201 PFHFNKYCIFPFTVRLSRTF 142
PF N +CIFP+ LS+ F
Sbjct: 67 PFTLNPWCIFPYVNPLSQDF 86
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 286 RERKNKKTRRSWQKTCARVE 345
R++K KKT + WQ+ RVE
Sbjct: 1351 RKKKKKKTEQLWQRNKVRVE 1370
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 32 QRRCFTVYH-INYYLEMGKKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQY 184
Q CF H ++Y L + K+ K E DG++ V+ +LD K KI +
Sbjct: 400 QSICFLECHKLSYILNLLKRIK-CERDDGTNLVRRAVDSILDSTRSKEKIDF 450
>At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 438
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 153 SRTFSTTNSSSLDPSLVSVFLSF 85
SR+ S+++SSS P VFLSF
Sbjct: 23 SRSLSSSSSSSFTPQKFDVFLSF 45
>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 858
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 17 KVLVLQRRCFTVYHINYYLEMGKKDKKTETSDGSSEEEFVVE 142
K L+ R+ + V H + EMG+K + ++ D E EF+V+
Sbjct: 473 KSLIHVRQGYVVMHRSLQ-EMGRKIVRIQSIDNPGEREFLVD 513
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 179 QYLLKWKGYKEDESTWEPVENLD 247
QYL+KWKG +W P + +
Sbjct: 78 QYLVKWKGLSYLHCSWVPEQEFE 100
>At3g43470.1 68416.m04608 hypothetical protein
Length = 458
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 201 PFHFNKYCIFPFTVRLSRTF 142
PF N +CIFP+ LS F
Sbjct: 364 PFTLNPWCIFPYVNPLSEDF 383
>At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase small
chain / ribonucleotide reductase nearly identical to
SP|P50651 Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2
subunit) {Arabidopsis thaliana}
Length = 341
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2
Query: 83 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLD 247
K+ + + +G SEE ++ + ++R I+Y W+ YK+ E+++ E +D
Sbjct: 5 KEGQGRDMEEGESEEPLLMAQ--NQRFTMFPIRYKSIWEMYKKAEASFWTAEEVD 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,294,325
Number of Sequences: 28952
Number of extensions: 119151
Number of successful extensions: 497
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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