Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H18
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568     28   2.6  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     27   4.5  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    27   5.9  
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658...    27   7.8  
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608...    27   7.8  
01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050     27   7.8  

>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
          Length = 156

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -3

Query: 272 GEPLLSKVTPSIKVISLFD-LKVSAYFKTFSLRHIYTSSSTQS--LTMPKTLPPIPRSVD 102
           G+ L  ++ P + V+ L D ++   Y    + R  Y+SSS+ S     P+  PP P  + 
Sbjct: 13  GDVLTFRLHP-LAVLKLSDRIREFQYQAAAAARVSYSSSSSSSSGTAAPEDPPPPPTRMS 71

Query: 101 SCSVGIXXXXXXXXXXXXXTLISF--DPAT 18
            C +G+              LI    DPAT
Sbjct: 72  GCVIGVRRGGTVDVSDILDILILHGPDPAT 101


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 163 DVYM-CLKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQVES 339
           DV++ CLKE +    ETL +  EI + DG      G   SA+     S E      + E+
Sbjct: 197 DVHLSCLKELMSHSHETLTNLYEILMEDGTPTNDCGEGASAQDNSSYSGESNGDAEEFEN 256

Query: 340 R 342
           +
Sbjct: 257 Q 257


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 167 TSSSTQSLTMPKTLPPIPRSVDSCSVGI 84
           +S+ST S T+ +  PP PRS+ SC   I
Sbjct: 6   SSTSTPSSTIERLRPPYPRSI-SCHASI 32


>05_02_0099 -
           6582498-6582725,6583148-6583235,6583437-6583830,
           6585855-6585990,6586413-6586931
          Length = 454

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 212 KVSAYFKTFSL-RHIYTSSSTQSLTMPKTLPPIPRSVDSCSVG 87
           KVS    +  L +H   SSS+    MP  LPP P S ++ ++G
Sbjct: 46  KVSRRLHSLDLPKHHRRSSSSSPPPMPPPLPPPPPSANAPTLG 88


>03_06_0221 +
           32458867-32459149,32460271-32460386,32460461-32460807,
           32461231-32461411,32461507-32461629,32461828-32462115,
           32462536-32462688,32463068-32463169,32463260-32463313,
           32463518-32463624,32463867-32463927,32464019-32464150,
           32464245-32464382,32464459-32464539,32464635-32464715,
           32465133-32465213,32465300-32465413
          Length = 813

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 103 IPVRWASRAPPRLKVGQPRKPS 38
           +P   A+R P R+K+GQP+ P+
Sbjct: 80  LPQPSAARKPLRIKIGQPKLPT 101


>01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050
          Length = 446

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 259 SKGSPMSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFKMPSSAV 411
           +K  P  A A    S EP+  E      ++D  ADF+E   I   +  S +
Sbjct: 139 TKLEPFVAEAESEASSEPQVEEGPPVPAMLDDEADFVEASPIVHSVNDSGI 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,952,542
Number of Sequences: 37544
Number of extensions: 246831
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)