Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H18
(415 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37) 31 0.50
SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_33552| Best HMM Match : MIF (HMM E-Value=9.7) 31 0.50
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.66
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32) 29 1.1
SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_30204| Best HMM Match : DUF1644 (HMM E-Value=7.7) 29 2.0
SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38) 28 2.6
SB_39153| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 28 3.5
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 27 4.6
SB_1014| Best HMM Match : HEAT (HMM E-Value=0.097) 27 4.6
SB_23357| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82) 27 8.1
SB_22443| Best HMM Match : Prosystemin (HMM E-Value=6.7) 27 8.1
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 31.9 bits (69), Expect = 0.21
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 374 FSKKSAAESTNLDSTCASLAFGSSDSGSKARADI-GEPLLSKVTPSIKVISLFDLKVSAY 198
F + AE ++DST + + GSS SG + D G+ + ++T V++L ++
Sbjct: 94 FPNSNKAEDADIDSTSCTNSHGSSLSGRRGLEDFKGDDIEDELTQLKAVVALRSIQKGDS 153
Query: 197 FKTFSLRHIYTSSST 153
K+F L + T
Sbjct: 154 PKSFDLSSVCDEGKT 168
>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
Length = 583
Score = 30.7 bits (66), Expect = 0.50
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 44 FTRLSYF*SRRCARCPPNRNLQILESVAAFWALLRTVSTM 163
F+ + YF ++ + PPN+ Q AAFW L T++T+
Sbjct: 334 FSSVIYFTEQKMSDGPPNKPSQFSSIPAAFWYTLVTMTTL 373
>SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 30.7 bits (66), Expect = 0.50
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPK 315
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 18 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 75
>SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.7 bits (66), Expect = 0.50
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPK 315
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 72 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 129
>SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)
Length = 148
Score = 30.7 bits (66), Expect = 0.50
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPK 315
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 20 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 77
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 30.3 bits (65), Expect = 0.66
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +1
Query: 91 TEQESTDLGIGGSVLGIVKDCVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGS 270
+EQ L S+ ++ VDD + K + K + LR K EI + +
Sbjct: 1415 SEQVHDSLAHAQSLKDDLESQVDDLNFQ--KSSLEKENDLLRKKMEIVEEEMKLTAIENK 1472
Query: 271 PMSARALEPLSDEPKAREAQVESRLVDSA 357
P+ A +PLS+E +A +AQ+ V+ A
Sbjct: 1473 PLDAVDAKPLSEENEALKAQISQITVELA 1501
>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
Length = 788
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 187 KVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQVESRLVDSAADF 366
+VL+ ++L E + + +E KG+ +A L +P+A E ++ RL
Sbjct: 152 RVLRITDSLLHGEEEEMRGWLLVEQKGALGTATVTRSLDTDPQASELVIQVRLAGGIGVS 211
Query: 367 LENYV 381
+ NYV
Sbjct: 212 VVNYV 216
>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 194 KTFSLRHIYTSSSTQSLTMPKTLPPIPRSVDSCSVGI 84
KTF ++T STQ TLP I VD +V I
Sbjct: 523 KTFMFDRVFTPDSTQEQVFEDTLPLIASCVDGYNVCI 559
>SB_30204| Best HMM Match : DUF1644 (HMM E-Value=7.7)
Length = 267
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Frame = +3
Query: 105 YRSWNR---WQRFGHC*GLCR 158
+ SW+R W RFG C G+CR
Sbjct: 10 FGSWDRFGSWDRFGSCTGICR 30
>SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)
Length = 742
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -3
Query: 371 SKKSAAESTNLDSTCASLAFGSSDSGSKARADIGEPLLSKVTPSIKVISLFDLKV 207
++ +AA S +L ++ +LA S+ SGS ++ +G+ L K+ ++ DLKV
Sbjct: 239 AESTAASSESLVASSPALASISNASGSSSQFSVGDLTLGKIGRVQQIYHDNDLKV 293
>SB_39153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.9 bits (59), Expect = 3.5
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 136 GIVKDCVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPK 315
G V++ +D++VY + +V YA+ + E+ L D +++ + A L+ +D+P
Sbjct: 24 GFVEEPLDNEVYRFISNEVFFYADEI----EVDLSDVMSIPDPLLKVEA-GLKGTADKPV 78
Query: 316 AREA-QVESRLVDSAA 360
+A + ++L+D AA
Sbjct: 79 PLKAVHIRAKLLDLAA 94
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 151 CVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPMS 279
CV D + C K+L Y ET+ K+ I ++ T+ +K S S
Sbjct: 761 CVLQDEFYCSPAKILHYVETVFFKKLIAVVQ-KTVRAKQSQRS 802
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 238 IDGVTLESKGSPMSARALEPLSDEPKAREAQVESRLVDSAAD 363
++GV+ S+ S A+ LE L+ E + + +SRL +S A+
Sbjct: 739 LEGVSKASEQSKTHAQKLESLNKEQENKLVDAQSRLEESEAE 780
>SB_1014| Best HMM Match : HEAT (HMM E-Value=0.097)
Length = 168
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 102 IYRSWNRWQRFGHC*GLCRR*RVYVPQGEGFEICRDFEVEE 224
+YR ++RWQ G+C++ R+ V ++ +DF E
Sbjct: 28 LYRGYSRWQTREEGRGICKQ-RLKVLAKNNMDVLKDFNYSE 67
>SB_23357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 257 RAKVRQCPHVLWSRCPMSRKRERHR 331
R+K RQCP LW C + KR+R +
Sbjct: 148 RSKKRQCPPGLW-LCKATPKRQRRK 171
>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
Length = 1642
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 223 REITLIDGVTLES--KGSPMSARALEPLSDEPKAREAQVESRLVDSAADFLENYV 381
RE+ L DG++ S KG + SD P+ + Q V+S+ DF+ V
Sbjct: 1481 REVELTDGLSQGSVNKGVNGQDSECQDESDHPEVADRQASDLSVESSQDFVNKDV 1535
>SB_22443| Best HMM Match : Prosystemin (HMM E-Value=6.7)
Length = 274
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 223 REITLIDGVTLES--KGSPMSARALEPLSDEPKAREAQVESRLVDSAADFLENYV 381
RE+ L DG++ S KG + SD P+ + Q V+S+ DF+ V
Sbjct: 113 REVELTDGLSQGSVNKGVNGQDSECQDESDHPEVADRQASDLSVESSQDFVNKDV 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,565
Number of Sequences: 59808
Number of extensions: 271711
Number of successful extensions: 790
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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