Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H18
         (415 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050677-1|AAH50677.1|  585|Homo sapiens proline rich 14 protein.      30   3.5  
BC021934-1|AAH21934.1|  585|Homo sapiens PRR14 protein protein.        30   3.5  
BC010232-1|AAH10232.1|  558|Homo sapiens PRR14 protein protein.        30   3.5  
BC000119-1|AAH00119.1|  585|Homo sapiens proline rich 14 protein.      30   3.5  
AK074783-1|BAC11207.1|  585|Homo sapiens protein ( Homo sapiens ...    30   3.5  
M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1 s...    29   8.1  
D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium...    29   8.1  
AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel, voltag...    29   8.1  

>BC050677-1|AAH50677.1|  585|Homo sapiens proline rich 14 protein.
          Length = 585

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 217 SKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQV---ESRLVDSAADFLENYVIQ 387
           +K+E +L +  T ++  SP + R  E + +EP+ R   +    SR +  A +F ++ + +
Sbjct: 471 NKKEFSLEEIYTNKNYQSPTTRRTFETIFEEPRERNGTLIFTSSRKLRRAVEFRDSSLPR 530

Query: 388 FKMPSSAV 411
            + PS  V
Sbjct: 531 SRRPSRGV 538


>BC021934-1|AAH21934.1|  585|Homo sapiens PRR14 protein protein.
          Length = 585

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 217 SKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQV---ESRLVDSAADFLENYVIQ 387
           +K+E +L +  T ++  SP + R  E + +EP+ R   +    SR +  A +F ++ + +
Sbjct: 471 NKKEFSLEEIYTNKNYQSPTTRRTFETIFEEPRERNGTLIFTSSRKLRRAVEFRDSSLPR 530

Query: 388 FKMPSSAV 411
            + PS  V
Sbjct: 531 SRRPSRGV 538


>BC010232-1|AAH10232.1|  558|Homo sapiens PRR14 protein protein.
          Length = 558

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 217 SKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQV---ESRLVDSAADFLENYVIQ 387
           +K+E +L +  T ++  SP + R  E + +EP+ R   +    SR +  A +F ++ + +
Sbjct: 444 NKKEFSLEEIYTNKNYQSPTTRRTFETIFEEPRERNGTLIFTSSRKLRRAVEFRDSSLPR 503

Query: 388 FKMPSSAV 411
            + PS  V
Sbjct: 504 SRRPSRGV 511


>BC000119-1|AAH00119.1|  585|Homo sapiens proline rich 14 protein.
          Length = 585

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 217 SKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQV---ESRLVDSAADFLENYVIQ 387
           +K+E +L +  T ++  SP + R  E + +EP+ R   +    SR +  A +F ++ + +
Sbjct: 471 NKKEFSLEEIYTNKNYQSPTTRRTFETIFEEPRERNGTLIFTSSRKLRRAVEFRDSSLPR 530

Query: 388 FKMPSSAV 411
            + PS  V
Sbjct: 531 SRRPSRGV 538


>AK074783-1|BAC11207.1|  585|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90302 fis, clone NT2RP2000616, weakly similar to
           EXTENSIN PRECURSOR. ).
          Length = 585

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 217 SKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQV---ESRLVDSAADFLENYVIQ 387
           +K+E +L +  T ++  SP + R  E + +EP+ R   +    SR +  A +F ++ + +
Sbjct: 471 NKKEFSLEEIYTNKNYQSPTTRRTFETIFEEPRERNGTLIFTSSRKLRRAVEFRDSSLPR 530

Query: 388 FKMPSSAV 411
            + PS  V
Sbjct: 531 SRRPSRGV 538


>M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1
           subunit protein.
          Length = 2181

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 21  CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 134
           CW  R    +  P+  R   +   ++ + R W RW RF
Sbjct: 494 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 531


>D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium
           channel alpha1 subunit, CACN4 protein.
          Length = 2170

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 21  CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 134
           CW  R    +  P+  R   +   ++ + R W RW RF
Sbjct: 485 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 522


>AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel,
           voltage-dependent, L type, alpha 1D subunit variant
           protein.
          Length = 1854

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 21  CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 134
           CW  R    +  P+  R   +   ++ + R W RW RF
Sbjct: 167 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 204


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.315    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,050,589
Number of Sequences: 237096
Number of extensions: 1228061
Number of successful extensions: 2391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2388
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)