Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H18
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    31   0.41 
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro...    28   2.2  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    28   2.2  
At5g65370.1 68418.m08222 epsin N-terminal homology (ENTH) domain...    28   2.9  
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P...    28   2.9  
At2g40955.1 68415.m05057 hypothetical protein                          27   5.0  
At3g06600.1 68416.m00767 expressed protein ; expression supporte...    27   6.6  
At2g37000.1 68415.m04538 TCP family transcription factor, putati...    27   6.6  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    26   8.7  

>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 253 LESKGSPMSARALEPLSDEPKAREAQVESRLVDSAA 360
           +++ GSP+S +A +P    PK+ EA+  S +  S++
Sbjct: 323 VQASGSPLSVQASKPADSSPKSSEAKDSSSIAGSSS 358


>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
           protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
           zinc finger-containing protein ZIGA3 GI:10441352 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 483

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 181 KEKVLKY-AETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQ 330
           +E  L+Y + +  +  +   ++G+T  S G P S+ A +P S  P ++  +
Sbjct: 418 QENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGK 468


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 253 LESKGSPMSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFK 393
           L S G P +  A EP SDE + + A+ E  +V++ A+     V+ F+
Sbjct: 776 LNSLGKPQAVIAEEPASDETELQSARSEG-VVEAGANKKRGMVLPFE 821


>At5g65370.1 68418.m08222 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to clathrin
           assembly protein AP180 (GI:6492344) [Xenopus laevis]
          Length = 295

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 233 VISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRSVDSCSVGI 84
           VI + +L V  YF    L  I        +  P  L P+   +++C  G+
Sbjct: 222 VIEMTELMVQDYFSAIRLMRIRFEELNVRVAKPNELVPVLEKLENCKEGL 271


>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 1016

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 115 GIGGSVLGIVK-DCVDDDVYMCLKEKVLKYAETLRSK 222
           G+G S L I K +  D+D Y C  +KVLK +  L +K
Sbjct: 348 GLGLSSLEIYKHEEEDEDAYFCYVKKVLKVSGFLENK 384


>At2g40955.1 68415.m05057 hypothetical protein
          Length = 679

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 344 NLDSTCASLAFGSSDSGSKARADIGEPLLSKVTPSIKVISLFDLKVS 204
           +L+S CA+ +F  +DS SK  A++ +  +     +   +S+F ++ S
Sbjct: 287 HLESVCATKSFLDNDSMSKLEAELTDSKMRTAGVTQHQVSIFVMETS 333


>At3g06600.1 68416.m00767 expressed protein ; expression supported
           by MPSS
          Length = 193

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 178 LKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQVESRLVDSA 357
           LK+  +K  +    KR+I     V+ ES   PM    +  +S      +++ ES +  S+
Sbjct: 22  LKDPEMKNRKVTTEKRQIATFSDVSFESTKDPMDFSPISQISG--AISDSEAESVIQGSS 79

Query: 358 ADFL 369
            D +
Sbjct: 80  LDLM 83


>At2g37000.1 68415.m04538 TCP family transcription factor, putative
           similar to TFPD  (GI:6681577) [Arabidopsis thaliana]
          Length = 188

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -3

Query: 296 GSKARADIGEPLLSKVTPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPI 117
           G K   +  E LLS+  PSI   + +  K+ + +   +      SSS+ S+T P+T    
Sbjct: 75  GHKTEGETIEWLLSQAEPSIIAATGYGTKLISNWVDVAADD---SSSSSSMTSPQTQTQT 131

Query: 116 PRSVDSCSVGI 84
           P+S  SC + +
Sbjct: 132 PQS-PSCRLDL 141


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 1610

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 154  VDDDV--YMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEP 297
            +D+D   Y C+K+    YA   R   +  + DG+ LE K   +    +EP
Sbjct: 1353 IDNDYGGYSCIKDGC-SYAAHSRCATQRNVWDGIELEGKPEEVEEEVVEP 1401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,252,443
Number of Sequences: 28952
Number of extensions: 185198
Number of successful extensions: 462
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)